| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1856 |
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| Symbol | |
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| ID | 6087116 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 2062894 |
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| End bp | 2064267 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641596927 |
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| Product | multidrug efflux protein |
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| Protein accession | YP_001720600 |
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| Protein GI | 170024095 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.372072 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAGAAGT ATATAGTTGA AGCGCGTAGC TTGTTGGCTC TCGCTATTCC CGTTGTCATC
GCGCAACTGT CTCAAACCGC TATGGGTGTT GTTGACACGA TCATGGCCGG CTCTGTCAGT
GCAACAGACA TGGCAGCGGT GGCGGTAGGC ACGTCTATCT GGCTACCCGC TATTTTATTC
GGACACGGCT TGTTACTCGC ACTAACGCCG ACTGTCGCCC AACTTAATGG TTCAGGGCGC
CGTAGCCAGA TTGCCCACCA AGTCAGGCAA GGGTTTTGGC TGGCACTCTG TGTTTCCGTG
TTAATTATGC TGGTGCTCTA TAATAGTGAC CACGTTATTA AACAAATGGA TAATATTGAC
CCCGTGCTGG CGCAGAAAGC CGTGGGTTTT CTGCATGCTA TCATGTGGGG TGTGCCCGGT
TATCTGTTCT TCCAAGTTCT GAGAAATCAG TGTGAAGGGC TATCCAAGAC TAAACCGGGA
ATGGTTATCG GGTTTGTTGG CCTGCTGGTT AACATCCCGA TTAACTACAT TTTTATCTAT
GGGAAATTTG GCGCGCCGGC CTTAGGTGGC GTAGGCTGCG GGGTGGCAAC AGCCTCTGTT
TATTGGGTGA TGTTCCTGAT GATGAGATGG TACGTAACGC GCGCCCGTTC TCAACAGGAT
ATCAAACTGG AAAAAGGATT TGCCGCGCCC GATTGGCAGG TAATGAAGCG TTTAAGTGGC
CTTGGCTTGC CCGTCGCCTT GGCCCTTTTT TTCGAGGTCA CGCTGTTCGC CGTCGTCGCC
CTATTGGTAT CGCCACTGGG TATTGTTGCT GTTGCCGGAC ACCAGATTGC CCTCAACTTC
AGTTCATTGA TGTTTATGTT ACCCATGTCA CTGAGTGTAG CAGCGACAAT TCGTGTCGGG
TTTCGTCTCG GACAAGGGGC GGTGGAACAG GCTCAGGTTG CAGCCTATAC CAGCATGGCG
GTTGGTTTAT TGCTGGCCAG CGTTACCGCT GTGTTTACCA TTGTTTTCCG TGAACATATT
GCGTTGTTGT ATAACAAGAC ACCTGAAGTG GTTACCATGG CGTCCCATCT GATGTTGCTG
GCGGCACTTT ATCAGTTGTC TGATGCCGTT CAGGTTATTG GGAGTGGTGT CTTGCGGGGC
TATAAAGATA CGCGCTCCAT TTTCTTTATT ACGTTTACCG CGTATTGGCT TCTCGGGTTA
CCCAGCGGCT ACCTTCTGGG CTTGACCGAT TATATCCTCC CTGCGATGGG GCCTGCTGGT
TTCTGGATAG GTTTCATTAT CGGTCTGACG GCTGCGGCTA TTCTGATGGT GCTGCGTATC
CGTTGGCTAC AAAAACAACC TACTGCGTTT ATTCTGCAAC GGGCAGCCCA TTAG
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| Protein sequence | MQKYIVEARS LLALAIPVVI AQLSQTAMGV VDTIMAGSVS ATDMAAVAVG TSIWLPAILF
GHGLLLALTP TVAQLNGSGR RSQIAHQVRQ GFWLALCVSV LIMLVLYNSD HVIKQMDNID
PVLAQKAVGF LHAIMWGVPG YLFFQVLRNQ CEGLSKTKPG MVIGFVGLLV NIPINYIFIY
GKFGAPALGG VGCGVATASV YWVMFLMMRW YVTRARSQQD IKLEKGFAAP DWQVMKRLSG
LGLPVALALF FEVTLFAVVA LLVSPLGIVA VAGHQIALNF SSLMFMLPMS LSVAATIRVG
FRLGQGAVEQ AQVAAYTSMA VGLLLASVTA VFTIVFREHI ALLYNKTPEV VTMASHLMLL
AALYQLSDAV QVIGSGVLRG YKDTRSIFFI TFTAYWLLGL PSGYLLGLTD YILPAMGPAG
FWIGFIIGLT AAAILMVLRI RWLQKQPTAF ILQRAAH
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