| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1788 |
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| Symbol | |
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| ID | 6087748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 1984467 |
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| End bp | 1987079 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641596856 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_001720532 |
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| Protein GI | 170024027 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0202884 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTAGTG CTTTCATATT TTTTCAAAAA AACGAGTGCC TAAAATATTT ACCGGCATTC
TCTTTCGCTA TTTGTGGTAT TGGTGGCATG TTATATATTC CGTCATCTGC CGCCGAGAAT
TCTGAATACG TTGAATTTAG TGACGCCTTC CTCCGTTTTC CCGTTGATGC CACCCGCTAC
AGTGAGGGTA ATCCTGTTTC CCCCGGTGAG CGTCAGGTTG ATATCTATTT AAATGATCAA
TGGATTGGTC GTCAGGAAAT GCGTTTTGCC TTGCCGTCGC CAGAATCGAA AGTTGCCACC
CCCTGTTTTG ACGTAAAACT CTTTGATGAG TTGGGGGTTG ATACGGCGAA GTTATCTTCC
GATACCGTGA AATTGCTCGA AAGTCGCGGG GCATGCTCTC CGTTGAGTCG TTTGCTGGAA
GGTGGAAATG CTATTTTTGA CGACAATCAG CAACGCTTGG ATATTCAGGT TCCTCAAGCT
TATCTGATCC GCCAGGCTCG CGGTTATGTG CATCCTAAAT ATTGGGATGA TGGCGTGACA
GCGGCCACCT TGAAATATGA CTATACCGGT TACCGCAGTA ACCAGAATGA TATCGGTAGC
CAGACTTATC AATATCTGGG GCTCTTGGGC GGGCTTAACT GGCAAAGCTG GCGTCTATAT
TACCGCAGTG CATTGAATCG AAGTGATAGC CAAGGCTTTG ATTATCAGAA CCTGGCCACT
TATGTTGAAC GGGCCGTTCC CTCGCTATAC AGCAAAATGA CTATTGGTGA TTCAAACACG
GATGGTCAGG TGTTCGACAG CCTTAGCTAT CGCGGCATTG AGTTGACCTC AGATGACCGG
ATGTATGCGG ATTCTCAGCG GGGTTATGCG CCAGTGGTAC GGGGTGTTGC TCGAACGAAC
GCCCGCGTCG TGGTGCGTCA ACAGGGGCGG CCTATTTATG AAACGACGGT ACCCCCAGGG
CCTTTTGTCA TTGACGACCT CTACCCGACC GGTCAGGGGG GCAATCTCAA TGTCACCATT
ACCGAAGCGG ATGGCAGCGA ACAGACATTT ATCGTTCCTT TTGCCTCGAT AGCGGAGTTG
CTGCGACCGG GAACCACGCG TTACTCATTG ATGGCCGGTG AGTATCGTGA CAATTCGATG
GTAGATAAAC CGGTTCTCTT TATGGGAACG GTGCGTCATG GGTTATCCAA TTTACTCACC
GGTAACGGCG GGATGGTTGC GGCTGAAGGC TATTTATCAG CCTCTGCCGG GTTGGCATTT
AACACACCGG TTGGTGCCGT GGCATTTAAT GTGACGCAAG CACAAACCCG TCTGCCTAAT
AAAGATAATC AACGTGGGCA AAGTATTGGT ATGACCTATG CTAAATCCTT GCCGGAAACC
AATACCAACT TGACCATCGC CAGTTATCAC TATTCCAGTA ACGGTTTTTA TACCCCAGCA
GAAGCTATGC GAATGCGTGA TTATTTACAG CATGGTGAAG TCAATAATAC GCAGATTGAT
TCAAGTTGGC CGAATGGCAG TGATCGCTAC GATGATAGTT TTAAGTATCG TCGCCGCAAT
CAGGCGCAAG TGAGTATCGC TCAGGGCTTA CCTGATGGCT ATGGCTCGTT CTACGCAAAT
GCCAATGTGC AGGATTACTG GGATGGGCGT AACCGCGATA TGAATTTTCA ATTCGGCTAC
ACGAATAGCT ATAAGTCGCT GAGTTATAAC GTGGCGCTTA ATCGCTTGCG TGATATACCT
AGCGGCGATT GGGACAACCA ATTAAGTGTT TCCCTTTCGA TTCCTCTGGG GACACATGCT
GGTGCACCAC GTTTGAGCTC CAGTTATTCC AATACTCGTG GTAGCAGTGC AATACAAACC
GGGGTTTCCG GCTCTGCGGG TGAGGATAAT CAATTTAGCT ATGGCGTATC TGCAGCGAAT
AACCGTAGCG ATGAAAATGG CAGTTATAAC ACCCTAGGTG CGAATGGCAG TTGGCAGGCA
CCTTACGCCA CGGTGGGCGG TAGTTATTCG AAGAGTAACA GCTATGATCA AGCCAGTGCC
AGCTTGTCAG GGGGGGTAGT GGCTTATCGT GGTGGGGTGA TATTGGCCCC TGCACTGGGT
GATACCGTCG GTATTATTGA GGCTCCAGAT GCTGCGGGAG CGCGAGTCGG CAGCTACTCC
AGTATGTATC TTGATCGTCG TGGGCGTGCG ATATTGCCTT ATTTAAGTCC GTATCGGCAG
AATGAGGTTG AATTAGATCC GAAAGGGCTA TCTGCAGATG TTGAGTTTAA AAGTACTAGC
CAAAAAGTTG CGCCAACCGC AGGTGCTGTT GCATTGGTAA CATTCGAGAC CTCAACCGGT
TATTCGGTTT TAGTCAGGGG GCATCTGGCA GATAACACCC CCTTGCCGTT TGGGGCGGAA
GTAAAAGATG GCGGAGGGAC CCGCGTCGGC TTTATTGCTC AGGGCGGTCA GGCAATGGTC
CGAGTGAATC AACAAGCCGG TAATCTGCGC GTGATATGGG GTGATGGCAT CGGTGAGAGT
TGCAGTTTTG ACTATAAATT GCCGGAAGGT AACCTAGTAA AAGGTCATCT GGTCAAAGGT
GACTACCGGC GCTTAGAGGT GATATGCAAA TGA
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| Protein sequence | MLSAFIFFQK NECLKYLPAF SFAICGIGGM LYIPSSAAEN SEYVEFSDAF LRFPVDATRY
SEGNPVSPGE RQVDIYLNDQ WIGRQEMRFA LPSPESKVAT PCFDVKLFDE LGVDTAKLSS
DTVKLLESRG ACSPLSRLLE GGNAIFDDNQ QRLDIQVPQA YLIRQARGYV HPKYWDDGVT
AATLKYDYTG YRSNQNDIGS QTYQYLGLLG GLNWQSWRLY YRSALNRSDS QGFDYQNLAT
YVERAVPSLY SKMTIGDSNT DGQVFDSLSY RGIELTSDDR MYADSQRGYA PVVRGVARTN
ARVVVRQQGR PIYETTVPPG PFVIDDLYPT GQGGNLNVTI TEADGSEQTF IVPFASIAEL
LRPGTTRYSL MAGEYRDNSM VDKPVLFMGT VRHGLSNLLT GNGGMVAAEG YLSASAGLAF
NTPVGAVAFN VTQAQTRLPN KDNQRGQSIG MTYAKSLPET NTNLTIASYH YSSNGFYTPA
EAMRMRDYLQ HGEVNNTQID SSWPNGSDRY DDSFKYRRRN QAQVSIAQGL PDGYGSFYAN
ANVQDYWDGR NRDMNFQFGY TNSYKSLSYN VALNRLRDIP SGDWDNQLSV SLSIPLGTHA
GAPRLSSSYS NTRGSSAIQT GVSGSAGEDN QFSYGVSAAN NRSDENGSYN TLGANGSWQA
PYATVGGSYS KSNSYDQASA SLSGGVVAYR GGVILAPALG DTVGIIEAPD AAGARVGSYS
SMYLDRRGRA ILPYLSPYRQ NEVELDPKGL SADVEFKSTS QKVAPTAGAV ALVTFETSTG
YSVLVRGHLA DNTPLPFGAE VKDGGGTRVG FIAQGGQAMV RVNQQAGNLR VIWGDGIGES
CSFDYKLPEG NLVKGHLVKG DYRRLEVICK
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