Gene YPK_1784 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1784 
Symbol 
ID6088898 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp1981388 
End bp1982269 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content47% 
IMG OID641596852 
Productheat shock protein HtpX 
Protein accessionYP_001720528 
Protein GI170024023 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0501] Zn-dependent protease with chaperone function 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000381435 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGCGTA TCGCTCTGTT CCTTCTCACC AACCTGGCGG TGATGCTAGT GTTCGGGTTG 
GTGTTAAGTC TGACGGGAAT TCAGTCAAGC AGTGTGCAGG GGCTGATGAT TATGGCGGGT
CTGTTTGGTT TCGGCGGCGC ATTTGTTTCG TTACTGATGT CCAAATGGAT GGCTTTACGT
TCAGTAGGCG GGGAGGTTAT TGAACGGCCA CGTAATGAAA CAGAATATTG GTTGTTGGAA
ACCGTACGTC GCCAGTCTCA ACAGGTAGGG ATCGCCATGC CACAAGTGGC TATTTATCAG
GCACCGGATA TTAACGCCTT TGCGACGGGG GCTCGTCGAG ATGCCTCTCT GGTGGCGGTC
AGTACCGGTT TATTGCAAAA TATGAGCCGT GATGAGGCTG AAGCCGTGAT TGCCCATGAA
ATCAGTCATG TGGCTAATGG TGATATGGTA ACCATGACTT TGATTCAAGG GGTCGTGAAT
ACGTTCGTGA TCTTTATTTC ACGACTGATT GCACAAATTG CCGCTGGTTT CTTATCAGGT
GACCGAGACG GTGAAAGTAA CAGCCCCGGT AATCCAATGG TCTATTTTGC CGTATCAATG
GTACTAGAAT TAGTGTTCGG CATTCTTGCC AGTATTATTA CCATGTGGTT TTCACGCCAT
CGTGAGTTCC ATGCAGATGC CGGTTCCGCA AAATTGGTTG GGCGTGAAAA AATGATTGCG
GCATTACAAC GGCTGAAAAC CAGCTATGAA CCGCAGGAAG CGGGTAGCAT GATGGCTTTC
TGTATTAATG GTAAATCTAA AACGTTTAGT GAATTGTTTA TGTCACACCC GCCTTTAGAT
AAACGTATAG AGGCATTACG TTCTGGTCAG TATCTGAAGT AA
 
Protein sequence
MMRIALFLLT NLAVMLVFGL VLSLTGIQSS SVQGLMIMAG LFGFGGAFVS LLMSKWMALR 
SVGGEVIERP RNETEYWLLE TVRRQSQQVG IAMPQVAIYQ APDINAFATG ARRDASLVAV
STGLLQNMSR DEAEAVIAHE ISHVANGDMV TMTLIQGVVN TFVIFISRLI AQIAAGFLSG
DRDGESNSPG NPMVYFAVSM VLELVFGILA SIITMWFSRH REFHADAGSA KLVGREKMIA
ALQRLKTSYE PQEAGSMMAF CINGKSKTFS ELFMSHPPLD KRIEALRSGQ YLK