Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1784 |
Symbol | |
ID | 6088898 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 1981388 |
End bp | 1982269 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641596852 |
Product | heat shock protein HtpX |
Protein accession | YP_001720528 |
Protein GI | 170024023 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0501] Zn-dependent protease with chaperone function |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.000381435 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATGCGTA TCGCTCTGTT CCTTCTCACC AACCTGGCGG TGATGCTAGT GTTCGGGTTG GTGTTAAGTC TGACGGGAAT TCAGTCAAGC AGTGTGCAGG GGCTGATGAT TATGGCGGGT CTGTTTGGTT TCGGCGGCGC ATTTGTTTCG TTACTGATGT CCAAATGGAT GGCTTTACGT TCAGTAGGCG GGGAGGTTAT TGAACGGCCA CGTAATGAAA CAGAATATTG GTTGTTGGAA ACCGTACGTC GCCAGTCTCA ACAGGTAGGG ATCGCCATGC CACAAGTGGC TATTTATCAG GCACCGGATA TTAACGCCTT TGCGACGGGG GCTCGTCGAG ATGCCTCTCT GGTGGCGGTC AGTACCGGTT TATTGCAAAA TATGAGCCGT GATGAGGCTG AAGCCGTGAT TGCCCATGAA ATCAGTCATG TGGCTAATGG TGATATGGTA ACCATGACTT TGATTCAAGG GGTCGTGAAT ACGTTCGTGA TCTTTATTTC ACGACTGATT GCACAAATTG CCGCTGGTTT CTTATCAGGT GACCGAGACG GTGAAAGTAA CAGCCCCGGT AATCCAATGG TCTATTTTGC CGTATCAATG GTACTAGAAT TAGTGTTCGG CATTCTTGCC AGTATTATTA CCATGTGGTT TTCACGCCAT CGTGAGTTCC ATGCAGATGC CGGTTCCGCA AAATTGGTTG GGCGTGAAAA AATGATTGCG GCATTACAAC GGCTGAAAAC CAGCTATGAA CCGCAGGAAG CGGGTAGCAT GATGGCTTTC TGTATTAATG GTAAATCTAA AACGTTTAGT GAATTGTTTA TGTCACACCC GCCTTTAGAT AAACGTATAG AGGCATTACG TTCTGGTCAG TATCTGAAGT AA
|
Protein sequence | MMRIALFLLT NLAVMLVFGL VLSLTGIQSS SVQGLMIMAG LFGFGGAFVS LLMSKWMALR SVGGEVIERP RNETEYWLLE TVRRQSQQVG IAMPQVAIYQ APDINAFATG ARRDASLVAV STGLLQNMSR DEAEAVIAHE ISHVANGDMV TMTLIQGVVN TFVIFISRLI AQIAAGFLSG DRDGESNSPG NPMVYFAVSM VLELVFGILA SIITMWFSRH REFHADAGSA KLVGREKMIA ALQRLKTSYE PQEAGSMMAF CINGKSKTFS ELFMSHPPLD KRIEALRSGQ YLK
|
| |