| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1486 |
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| Symbol | |
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| ID | 6088914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 1648026 |
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| End bp | 1650794 |
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| Gene Length | 2769 bp |
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| Protein Length | 922 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641596555 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001720232 |
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| Protein GI | 170023727 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTTATC TATTGGGTGA GCCTGCGCTG GTACTGTCTA AGTTGGAAGG CGAGGAAGCT
TTTTCGACTT TATATTCTTA TACTATTACG GCAAAGACAC CGGCTAATCC ATTAATTCCT
TGGCAAGCGG CTTCAAATGT CGATCTCAAA TCCTTAATTG GTAAAGAGAT GACGATTGAA
ATGGAACTGG ACGGCAACGG CCTGGGTGAT GTGAGAAGTG TAGGTAAAGG CACGCGTGAA
ATTACGGGGC TGGTTGAGAG AGCCAGATAC ATTGGTCGAG ATGCCAATCA GGCCATATTT
GAGATCACTA TTAAGCCTTG GTTCTACCTG GCTAATTTAA CCTCTGACTT TAAAATTTAT
CAAAATAAAA ATGTCGTTGA TATTATAGAG GAAGTGTTCT CAGACTATAA TTTTCCGTTT
GAGAAACGGT TGGCTACAAC CTATCCGATA TTAGATTTTC AGGTTCAGTA CGGTGAAACC
GACTTTAATT TCCTTCAGCG TTTGATGGAA GAGTGGGGTA TTTACTGGTT CTTTGAGCAT
CAGGATCATA AACAAAAATT AATTCTTGTG GATCATGTCG GTGCGCATAA ACGCTCGTTC
AGTACCGCCT ACCATGCCAT TGAGTACTTG TCAGATGAGC CTAAAGCGGG CGAAGAGTAC
ATCACACAAT TCCAGACTCA GGAAACCTTG ACGAGTGGGA CCTGGGTCAC CAACGATTAT
GACTTCACGA AATCCCGTGC CGATATTCTG GCAATGGACA GTAAACCGCG TAAAACCAGC
TTTAACGATC TCGAGATTTA TCACTGGCCA GGGGATTATG ATCAGCCAGA TATTGGTGAG
CACCTTTCAC GCGTGCGTAT CGAAGAACGT GGTGCTCTGG GTTCGCGGGC GGTCGGTTCT
GGTCAACTGC GCGGGATAGT TTGTGGTGCT AACTTCGAGC TGAAAGGGTT CCCCGTTGAT
AAAGCGAATC GGGAATACAT GATTATCTCC AGCCGTTTGA CGGTGGCTGA AGTTGATCAA
CTGTCTGGCG GTGAGGATGC GTTTAGTTGC GAGAGTTCTT TCACGGTTCA GCCGACGACC
AAAATCTATC GTCACCCACA GGTGACACCA AAACCGAAAA CCAATGGGCC GCAAAACGCC
ATTATTGTGG GGCCACCGGG TGAAGAGATT TGGACCGATG AATATGGCCG CGTAAAAGTG
CGTTTCGTTT GGGATCGCTA TGGCACAAAC AGCGAGTCAG ACTCTTGCTG GCTACGTGTT
AGCCAGGCTT GGGCAGGTAA CAGCTTTGGT GGGATCTATA TTCCACGCAT TGGTCAGGAA
GTCATTGTTG ACTGTATTAA CGGCGATCCT GACCGGCCAA TGGTGATGGG CAGCCTTTAT
AATAACGTGA CGCGTCCCCC TTGGGACCTG CCTGCCAATG CGACGCAAAG TGGCATGGTC
AGTCGTACTG TTGGCGGCGG GTTAACCAAC TATAACGGCG TTCGTTTTGA AGATAAATCG
GGGCTGGAGC AGTACTGGGA ACAGGCCGAG CGCGATATGT CGCGTTTGAC TAAAAATAAT
GAAACGCAAA TTATCGGTGC CGATTCGGTC CTGAATGTTG GGGCCAACCG AAGTGAAGTT
GTCGGGGCCA ATTATAACCA AGATGTTCTT GGCACATCAA TGTTAGCCAT CGGTGCAGCC
TCTATGCTAC AGGTGGGATT GGCGCGTAGC GTTGTGGTTG GCGGAGCACA TTCACTGAAT
GTGGTTTTGG CGAATGCCAC CAATGTGGGT GGCGCTAACA TGACCAACGT AGGGGGATTT
AATGGCCTTG CGGTGGGGGG AGCCCATCAG ACAGCTGTAG GTGGTGCTGC GACACTGGCG
GCCGGCGGCC CTATTGCTAT TGGGGCGGGT GGTGAGCTTA TCCTCAGTGG GGATATCGTA
AAAATTGTTG GTAAAAGTAA GGTTATTATT CAGGGCGGTG AAGTTCACAT TAACTCTGAT
GATTGTTGTG GTCGTAAAAC GGGCAATGGC GGCGGGGCAT TCGGTGCCTT TGCGAGCCTG
GCAGGTTTAT TGCCGCTGGC GGGTGCTATT GCCTTACCGC TACCGTTACC CTTGTTGCCA
ATAGTGGTGC CACCAGTGAC ATCGCCACCG GATCCGACAT TGCCACCGGA TCCGACATTG
CCACCAGATC CAACGTTACC GCCGGAAACA ACGGCACCGC CGGAAACCAC GGCACCGCCG
GAAACAACGG CACCGCCAGA AACAACGGCA CCGCCAGAGA CAACGGCACC GCCGGAAACA
ACGGCACCGC CGGAAACCAC GGCACCGCCA GAGACAACGG CACCGCCGGA AACAACGGCA
CCGCCAGAAA CAACGGCACC GCCGGAAACA ACGGCACCGC CGGAAACAAC GGCACCGCCA
GAAACAACGG CACCGCCGGA AACCACGGCA CCGCCGGAAA CAACGGCACC GCCGGAAACA
ACGGCACCGC CGGAAACAAC GGCACCGCCG GAAACAACGG CACCGCCAGA AACAACGGCA
CCGCCAGAAA CAACGGCACC GCCAGAAACA ACGGCACCGC CAGAGACAAC GGCACCGCCG
GAAACAACGG CACCGCCAGA GACAACGGCA CCGCCAGAGA CAACGGCACC GCCGGAAACA
ACGGCACCGC CGGAAACAAC GGCACCGCCG GAAACCACGG CACCGCCAGA GACAACGGCA
CCGCCAGAGA CAACGGCACC GCCGGAACCG ACGCGAACAC CGCCAGGGAC GCAGACGCCA
CCGCCTTGA
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| Protein sequence | MPYLLGEPAL VLSKLEGEEA FSTLYSYTIT AKTPANPLIP WQAASNVDLK SLIGKEMTIE
MELDGNGLGD VRSVGKGTRE ITGLVERARY IGRDANQAIF EITIKPWFYL ANLTSDFKIY
QNKNVVDIIE EVFSDYNFPF EKRLATTYPI LDFQVQYGET DFNFLQRLME EWGIYWFFEH
QDHKQKLILV DHVGAHKRSF STAYHAIEYL SDEPKAGEEY ITQFQTQETL TSGTWVTNDY
DFTKSRADIL AMDSKPRKTS FNDLEIYHWP GDYDQPDIGE HLSRVRIEER GALGSRAVGS
GQLRGIVCGA NFELKGFPVD KANREYMIIS SRLTVAEVDQ LSGGEDAFSC ESSFTVQPTT
KIYRHPQVTP KPKTNGPQNA IIVGPPGEEI WTDEYGRVKV RFVWDRYGTN SESDSCWLRV
SQAWAGNSFG GIYIPRIGQE VIVDCINGDP DRPMVMGSLY NNVTRPPWDL PANATQSGMV
SRTVGGGLTN YNGVRFEDKS GLEQYWEQAE RDMSRLTKNN ETQIIGADSV LNVGANRSEV
VGANYNQDVL GTSMLAIGAA SMLQVGLARS VVVGGAHSLN VVLANATNVG GANMTNVGGF
NGLAVGGAHQ TAVGGAATLA AGGPIAIGAG GELILSGDIV KIVGKSKVII QGGEVHINSD
DCCGRKTGNG GGAFGAFASL AGLLPLAGAI ALPLPLPLLP IVVPPVTSPP DPTLPPDPTL
PPDPTLPPET TAPPETTAPP ETTAPPETTA PPETTAPPET TAPPETTAPP ETTAPPETTA
PPETTAPPET TAPPETTAPP ETTAPPETTA PPETTAPPET TAPPETTAPP ETTAPPETTA
PPETTAPPET TAPPETTAPP ETTAPPETTA PPETTAPPET TAPPETTAPP ETTAPPETTA
PPETTAPPEP TRTPPGTQTP PP
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