Gene YPK_1485 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1485 
Symbol 
ID6090344 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp1643872 
End bp1647699 
Gene Length3828 bp 
Protein Length1275 aa 
Translation table11 
GC content46% 
IMG OID641596554 
Producttype VI secretion protein IcmF 
Protein accessionYP_001720231 
Protein GI170023726 
COG category[S] Function unknown 
COG ID[COG3523] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03348] type VI secretion protein IcmF 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTTATT TGAATCGATT GTTTTCTGGC TGGGCCATGA AACGCATATT GCTGGTCGGC 
TGCTTTATAT TGCTGGCTGC GGCGATATGG TTTCTGGGGC CTTTCCTCGG CTTTGGTGAG
GCGCGGCCTC TCGAAAGTTA TGAAGCCAGA ATTATTTGCA TCCTGCTGGC ACTGCTGCTG
ATCTTAGGTT TTTGGTACGG CGCACCGCGC TTTGTCATTG CCGCCGTCGT TGCCTGTGCT
GCGGTATGGG TGATTGGCCC ATTCATATTA GTTGGTGATG ATCATCCTCT GACTGATGGG
ATCCGTCGCG GCATCATTAT CGCCATCATT GCATTTATTA CACTTATTTA TGGTACCTGG
TGCTTAGTCA AAGCATTGGC GAAAAATCCA GCGTTACTGG ATAACTTCAT TAAGCACAAG
AAAGCGGCCA AGCCTGAAGC GGAGGCTGAA CTTTCTGAAG TTAATGCGAT GATCCGCAAT
GGCATGAACT ATGTGCGCCG TATTCACAGT GGTATTCCGG CCTGGCGACG TTTCTTTATC
TCCAGCCGTT GGCGCACAGA ACTGCCTTGG TTCATGGTTG TCGGTATGAA AGGTGCAGGG
AAAACCGCCC TTATCCTCTC TTCAGGACAG GACTTTCCTT TACCTGAGCA GCTGAATCGT
ATTGGCAAAG AAAACCCACC CACTCAACAT TGTGAATGTT TGTTCTCTAA TGACGCCCTG
TTTTTAGACA CTTCAGGGAA ATACATTGAT GACAGCAAAG ATAATCAGAC TGAGTGGAGC
GGGATATTAA AGGCACTCAA AAAATATCGT CCGGTTAAGG CAATTAATGG TGTCATTGTC
GCGATTTCGG CATCCGATAT CTTGGGTAAA AGTAAAGCTG ATTTACTGAA TGTGTCGGCG
ACGCTACGCA CGCGTTTGGA TGAGGTACGT GCGGTCTTGG GCGTCCGTTT CCCGGTGTAT
GTCACGATTA CAAAACTGGA TCAATTATCG GGTTTTGATG AATATTTCCG TAATTTAACG
GCTGAAGATC GCGAGCAAAT TTGGGGGGTG ACTTTCCCTT ATAACGAGGC GAAAGAGCAA
TCCGATATGC CACTTCAGCA ACGTATCAGC CATGAGCTGG CACTGCTTGA GGATCGTATC
AGCAATAATA TGCACGTCCG CCAGCAGGAA GAGTATGCCG TGGCGGACAG AAAAGGCATG
TATGCACTCC CCCAGGATTT CAGGATGCTC TCCCAGAGGG TAACGGAAGT TTTACAGAAT
GTTTTCTTCG CCTCACGCTT TGACGAAACA AAATTTCACA CGACCCTGAG AGGGATCTAT
TTTGTCAGCA GTTGTCAGCC TGCGGATGTT GAACTGTTAA ATAACAACAC GCTGATTCAA
AAGTGGCGTA ACGTTATTAA TCATAAAAAA CCGTTATCGC CAGCCGATTT ATCACAAAAA
AGTGATAATG AAGATCGGTT TATCAGCGAT GTGGCTTACG GGAAACAATA TTTCCTCAAG
CAGTTGTTTA GCGATGTGAT TACCAAAGAT GCCGACTTAG TCAGCTATAA CCTGAAAGTA
CAATCCAAAT ACCGTTTTCA GAATCTATTG GGACACGCGG CTTGTATTGG GTTGGCAGTT
TGGTTGGTTT GGGCCTTCTT GGTCAGCTTC CAGCATAACG AGGGGTATTT ACAGGCGACC
GGTGCCAAGC TGAGTCAGTT AGAAAGCACG GTGATGAGTT ATGCCAAAAC GTCCAATGAG
CAGATCTTAC CTGCGTTATT GAACGCGACA CAGCAGTTAC CCGAGTACGG TACGCTGGAT
GTGGCTAACC CTGAGCTTGA CTGGCGTTAT GGCTTATATA CCGGTAGCGC AATCTCACAA
GGTGCGAACA CGCTCTATCA GTTTTTCTTG CAAAAATATC TCTTCCCAAT GGTTGAGCAT
CAGAGTGAGG TTGCATTAAG AAAAACGATG CACTCAGGTC AGAGCGAAGA GGTTTATGCC
GCGTTGAAGC TTTATTTGAT GCTGACGGGT GAAGGTAAAT TTGATCGTCA ATATATGATT
GAGCACGTGA CCCAAGATTG GCAGAAAAGT GGAAAAATTG AGCCTTACGA AGAGAAGAGT
ATTTTCGTCG GTCATTTGAA CACGCTGTTT ACCCTGAAAG ACTGGCGGCA GTACGGGCAA
CCGGCAGACA GTGAACTGAT TAAGCAGGCT CGGGCAATAT TGGCGGAAAA AACAGTGACC
GCCAGACTTT GGGGGCGTAT TCAATCCCGC TTATTGGCCG ATGCCCCTGC CAATATGACG
TTACGTAAAA TGGTGGGTGA GCACGCGACA CAGGTATTCA CCCTGTCAGA TGATGAACTA
CTGCATGAAG GGATCCCAGG GCTTTATACC TACGCGGGTT ACCATGAGGT GGTTAAAAAA
AAACTGACAC CTTTGCTGAT GTTACTTCAA GAAGAGGATA GGTGGGTGAT GGCGCAATCG
CTGTCATCTT CTCTTGACCC ATTGACGTTA AGACAAGATG TTCTGGTGAT GTATTTACAA
GGGTATGCCG CTTATTGGAA ACGCTTTCTC TCCAGTGTTC GTCTGATTTC TGTCGATGCG
GACAGTGCAG AGTATGCTCA AGGGCTGTCT CTGGATATTG CTTTGTTAAG GACGTTAGTT
TCAGAAAATT CACCGCTACT CAATTTAGCC AGGCAGGCGG TAAAAGAAAC GACACTCGCC
GAAAAAGAAA AAGCCATTAC TGATGAGATA AACATCAGAA CGCAAGGGCA ATTACTCAGC
CAGGCTAAAA AATTACAAGA AACGATCGCG TTTCGTGAAA ATAAACTGAT TAAAGAGTGG
GTTGATAATC GTTTTGAATC CCTGAGAGTC TTTGTTAATG GGGAACAGAG TGCTGATGCC
CCGGGGGGCA ATAATCTTTC TGTTCTTCAG GGAACGCAGA TGAGCCGAAT AATCGGGACA
TTAAACGATC AATATACGCG TTTTGTTGTT TATAACAGTG CCTTTGAATA TGGCGATATC
CCTCCGTTAT CCCAGGATGG GGAACGTATT GCGGTGGAAT CACAAACGTG GCCGGATCCG
TTTAGAAATA TTATTGCACC GTTATTAACG GGCTCATCTC AGAAATTTGA AAATAAAGTG
ATTACTCACA CGTCCAAAGC GATTGATATG GGGGTGGGGG AAATTTGCCG GAATACGCTG
CAAGGGCGTT ATCCATTTGC TGAAAGTGAG CAAATTGTTA GTTTGAATGA TTTTGAGCGT
TTCTTCGGTA CTGACGGTAC GGTGGACAGT TATTTCAAGA AAAACTTGGA GAGTAAAGTC
GACACCTCCT CAATACCTTG GCGTTATAAG GGCAGCGTAA GTAGTGAAGG TTTGGCGTTC
TTTGAACAGG CGGCAATGAT CAGAAACGTG CTATTTAATA CCAATGACGG TAAAAAAATG
GCATTAGATT TTTCCGTATC AGTGCGTTAT TTAGCACCCA CTATCACCCA ACTTATTATG
AATTTTGATG GTAATACTGT GCGTTATTCC CATGGTCCCG TAACGCCTGC CTTCTTTAAA
TGGCCGGGTT TACGTCAAGG CACCATTGTC AGTTTAACGG CCCAACGCCA GAAGGCATCC
GCGATGCCCG ATATTCTTTT TCGCGGACCT TGGGCACTCT TGCAGTGGGC TGATCAGGCC
GATGAAATTC GCGATGAAGC GAATGGCAAA CAGACGCTGA CTTATCTCAT GGGGAAAGAT
CGTGTCGAGC TTGAAGTCTC AGGTTTAACG CATGGTGGTG AAACCATTAG CGATCTGCTG
AGAGATTTCA AATGCCCCAG TGTCAATGAC ATGAATGGTA TTTGGTAA
 
Protein sequence
MSYLNRLFSG WAMKRILLVG CFILLAAAIW FLGPFLGFGE ARPLESYEAR IICILLALLL 
ILGFWYGAPR FVIAAVVACA AVWVIGPFIL VGDDHPLTDG IRRGIIIAII AFITLIYGTW
CLVKALAKNP ALLDNFIKHK KAAKPEAEAE LSEVNAMIRN GMNYVRRIHS GIPAWRRFFI
SSRWRTELPW FMVVGMKGAG KTALILSSGQ DFPLPEQLNR IGKENPPTQH CECLFSNDAL
FLDTSGKYID DSKDNQTEWS GILKALKKYR PVKAINGVIV AISASDILGK SKADLLNVSA
TLRTRLDEVR AVLGVRFPVY VTITKLDQLS GFDEYFRNLT AEDREQIWGV TFPYNEAKEQ
SDMPLQQRIS HELALLEDRI SNNMHVRQQE EYAVADRKGM YALPQDFRML SQRVTEVLQN
VFFASRFDET KFHTTLRGIY FVSSCQPADV ELLNNNTLIQ KWRNVINHKK PLSPADLSQK
SDNEDRFISD VAYGKQYFLK QLFSDVITKD ADLVSYNLKV QSKYRFQNLL GHAACIGLAV
WLVWAFLVSF QHNEGYLQAT GAKLSQLEST VMSYAKTSNE QILPALLNAT QQLPEYGTLD
VANPELDWRY GLYTGSAISQ GANTLYQFFL QKYLFPMVEH QSEVALRKTM HSGQSEEVYA
ALKLYLMLTG EGKFDRQYMI EHVTQDWQKS GKIEPYEEKS IFVGHLNTLF TLKDWRQYGQ
PADSELIKQA RAILAEKTVT ARLWGRIQSR LLADAPANMT LRKMVGEHAT QVFTLSDDEL
LHEGIPGLYT YAGYHEVVKK KLTPLLMLLQ EEDRWVMAQS LSSSLDPLTL RQDVLVMYLQ
GYAAYWKRFL SSVRLISVDA DSAEYAQGLS LDIALLRTLV SENSPLLNLA RQAVKETTLA
EKEKAITDEI NIRTQGQLLS QAKKLQETIA FRENKLIKEW VDNRFESLRV FVNGEQSADA
PGGNNLSVLQ GTQMSRIIGT LNDQYTRFVV YNSAFEYGDI PPLSQDGERI AVESQTWPDP
FRNIIAPLLT GSSQKFENKV ITHTSKAIDM GVGEICRNTL QGRYPFAESE QIVSLNDFER
FFGTDGTVDS YFKKNLESKV DTSSIPWRYK GSVSSEGLAF FEQAAMIRNV LFNTNDGKKM
ALDFSVSVRY LAPTITQLIM NFDGNTVRYS HGPVTPAFFK WPGLRQGTIV SLTAQRQKAS
AMPDILFRGP WALLQWADQA DEIRDEANGK QTLTYLMGKD RVELEVSGLT HGGETISDLL
RDFKCPSVND MNGIW