Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1485 |
Symbol | |
ID | 6090344 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 1643872 |
End bp | 1647699 |
Gene Length | 3828 bp |
Protein Length | 1275 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641596554 |
Product | type VI secretion protein IcmF |
Protein accession | YP_001720231 |
Protein GI | 170023726 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTTATT TGAATCGATT GTTTTCTGGC TGGGCCATGA AACGCATATT GCTGGTCGGC TGCTTTATAT TGCTGGCTGC GGCGATATGG TTTCTGGGGC CTTTCCTCGG CTTTGGTGAG GCGCGGCCTC TCGAAAGTTA TGAAGCCAGA ATTATTTGCA TCCTGCTGGC ACTGCTGCTG ATCTTAGGTT TTTGGTACGG CGCACCGCGC TTTGTCATTG CCGCCGTCGT TGCCTGTGCT GCGGTATGGG TGATTGGCCC ATTCATATTA GTTGGTGATG ATCATCCTCT GACTGATGGG ATCCGTCGCG GCATCATTAT CGCCATCATT GCATTTATTA CACTTATTTA TGGTACCTGG TGCTTAGTCA AAGCATTGGC GAAAAATCCA GCGTTACTGG ATAACTTCAT TAAGCACAAG AAAGCGGCCA AGCCTGAAGC GGAGGCTGAA CTTTCTGAAG TTAATGCGAT GATCCGCAAT GGCATGAACT ATGTGCGCCG TATTCACAGT GGTATTCCGG CCTGGCGACG TTTCTTTATC TCCAGCCGTT GGCGCACAGA ACTGCCTTGG TTCATGGTTG TCGGTATGAA AGGTGCAGGG AAAACCGCCC TTATCCTCTC TTCAGGACAG GACTTTCCTT TACCTGAGCA GCTGAATCGT ATTGGCAAAG AAAACCCACC CACTCAACAT TGTGAATGTT TGTTCTCTAA TGACGCCCTG TTTTTAGACA CTTCAGGGAA ATACATTGAT GACAGCAAAG ATAATCAGAC TGAGTGGAGC GGGATATTAA AGGCACTCAA AAAATATCGT CCGGTTAAGG CAATTAATGG TGTCATTGTC GCGATTTCGG CATCCGATAT CTTGGGTAAA AGTAAAGCTG ATTTACTGAA TGTGTCGGCG ACGCTACGCA CGCGTTTGGA TGAGGTACGT GCGGTCTTGG GCGTCCGTTT CCCGGTGTAT GTCACGATTA CAAAACTGGA TCAATTATCG GGTTTTGATG AATATTTCCG TAATTTAACG GCTGAAGATC GCGAGCAAAT TTGGGGGGTG ACTTTCCCTT ATAACGAGGC GAAAGAGCAA TCCGATATGC CACTTCAGCA ACGTATCAGC CATGAGCTGG CACTGCTTGA GGATCGTATC AGCAATAATA TGCACGTCCG CCAGCAGGAA GAGTATGCCG TGGCGGACAG AAAAGGCATG TATGCACTCC CCCAGGATTT CAGGATGCTC TCCCAGAGGG TAACGGAAGT TTTACAGAAT GTTTTCTTCG CCTCACGCTT TGACGAAACA AAATTTCACA CGACCCTGAG AGGGATCTAT TTTGTCAGCA GTTGTCAGCC TGCGGATGTT GAACTGTTAA ATAACAACAC GCTGATTCAA AAGTGGCGTA ACGTTATTAA TCATAAAAAA CCGTTATCGC CAGCCGATTT ATCACAAAAA AGTGATAATG AAGATCGGTT TATCAGCGAT GTGGCTTACG GGAAACAATA TTTCCTCAAG CAGTTGTTTA GCGATGTGAT TACCAAAGAT GCCGACTTAG TCAGCTATAA CCTGAAAGTA CAATCCAAAT ACCGTTTTCA GAATCTATTG GGACACGCGG CTTGTATTGG GTTGGCAGTT TGGTTGGTTT GGGCCTTCTT GGTCAGCTTC CAGCATAACG AGGGGTATTT ACAGGCGACC GGTGCCAAGC TGAGTCAGTT AGAAAGCACG GTGATGAGTT ATGCCAAAAC GTCCAATGAG CAGATCTTAC CTGCGTTATT GAACGCGACA CAGCAGTTAC CCGAGTACGG TACGCTGGAT GTGGCTAACC CTGAGCTTGA CTGGCGTTAT GGCTTATATA CCGGTAGCGC AATCTCACAA GGTGCGAACA CGCTCTATCA GTTTTTCTTG CAAAAATATC TCTTCCCAAT GGTTGAGCAT CAGAGTGAGG TTGCATTAAG AAAAACGATG CACTCAGGTC AGAGCGAAGA GGTTTATGCC GCGTTGAAGC TTTATTTGAT GCTGACGGGT GAAGGTAAAT TTGATCGTCA ATATATGATT GAGCACGTGA CCCAAGATTG GCAGAAAAGT GGAAAAATTG AGCCTTACGA AGAGAAGAGT ATTTTCGTCG GTCATTTGAA CACGCTGTTT ACCCTGAAAG ACTGGCGGCA GTACGGGCAA CCGGCAGACA GTGAACTGAT TAAGCAGGCT CGGGCAATAT TGGCGGAAAA AACAGTGACC GCCAGACTTT GGGGGCGTAT TCAATCCCGC TTATTGGCCG ATGCCCCTGC CAATATGACG TTACGTAAAA TGGTGGGTGA GCACGCGACA CAGGTATTCA CCCTGTCAGA TGATGAACTA CTGCATGAAG GGATCCCAGG GCTTTATACC TACGCGGGTT ACCATGAGGT GGTTAAAAAA AAACTGACAC CTTTGCTGAT GTTACTTCAA GAAGAGGATA GGTGGGTGAT GGCGCAATCG CTGTCATCTT CTCTTGACCC ATTGACGTTA AGACAAGATG TTCTGGTGAT GTATTTACAA GGGTATGCCG CTTATTGGAA ACGCTTTCTC TCCAGTGTTC GTCTGATTTC TGTCGATGCG GACAGTGCAG AGTATGCTCA AGGGCTGTCT CTGGATATTG CTTTGTTAAG GACGTTAGTT TCAGAAAATT CACCGCTACT CAATTTAGCC AGGCAGGCGG TAAAAGAAAC GACACTCGCC GAAAAAGAAA AAGCCATTAC TGATGAGATA AACATCAGAA CGCAAGGGCA ATTACTCAGC CAGGCTAAAA AATTACAAGA AACGATCGCG TTTCGTGAAA ATAAACTGAT TAAAGAGTGG GTTGATAATC GTTTTGAATC CCTGAGAGTC TTTGTTAATG GGGAACAGAG TGCTGATGCC CCGGGGGGCA ATAATCTTTC TGTTCTTCAG GGAACGCAGA TGAGCCGAAT AATCGGGACA TTAAACGATC AATATACGCG TTTTGTTGTT TATAACAGTG CCTTTGAATA TGGCGATATC CCTCCGTTAT CCCAGGATGG GGAACGTATT GCGGTGGAAT CACAAACGTG GCCGGATCCG TTTAGAAATA TTATTGCACC GTTATTAACG GGCTCATCTC AGAAATTTGA AAATAAAGTG ATTACTCACA CGTCCAAAGC GATTGATATG GGGGTGGGGG AAATTTGCCG GAATACGCTG CAAGGGCGTT ATCCATTTGC TGAAAGTGAG CAAATTGTTA GTTTGAATGA TTTTGAGCGT TTCTTCGGTA CTGACGGTAC GGTGGACAGT TATTTCAAGA AAAACTTGGA GAGTAAAGTC GACACCTCCT CAATACCTTG GCGTTATAAG GGCAGCGTAA GTAGTGAAGG TTTGGCGTTC TTTGAACAGG CGGCAATGAT CAGAAACGTG CTATTTAATA CCAATGACGG TAAAAAAATG GCATTAGATT TTTCCGTATC AGTGCGTTAT TTAGCACCCA CTATCACCCA ACTTATTATG AATTTTGATG GTAATACTGT GCGTTATTCC CATGGTCCCG TAACGCCTGC CTTCTTTAAA TGGCCGGGTT TACGTCAAGG CACCATTGTC AGTTTAACGG CCCAACGCCA GAAGGCATCC GCGATGCCCG ATATTCTTTT TCGCGGACCT TGGGCACTCT TGCAGTGGGC TGATCAGGCC GATGAAATTC GCGATGAAGC GAATGGCAAA CAGACGCTGA CTTATCTCAT GGGGAAAGAT CGTGTCGAGC TTGAAGTCTC AGGTTTAACG CATGGTGGTG AAACCATTAG CGATCTGCTG AGAGATTTCA AATGCCCCAG TGTCAATGAC ATGAATGGTA TTTGGTAA
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Protein sequence | MSYLNRLFSG WAMKRILLVG CFILLAAAIW FLGPFLGFGE ARPLESYEAR IICILLALLL ILGFWYGAPR FVIAAVVACA AVWVIGPFIL VGDDHPLTDG IRRGIIIAII AFITLIYGTW CLVKALAKNP ALLDNFIKHK KAAKPEAEAE LSEVNAMIRN GMNYVRRIHS GIPAWRRFFI SSRWRTELPW FMVVGMKGAG KTALILSSGQ DFPLPEQLNR IGKENPPTQH CECLFSNDAL FLDTSGKYID DSKDNQTEWS GILKALKKYR PVKAINGVIV AISASDILGK SKADLLNVSA TLRTRLDEVR AVLGVRFPVY VTITKLDQLS GFDEYFRNLT AEDREQIWGV TFPYNEAKEQ SDMPLQQRIS HELALLEDRI SNNMHVRQQE EYAVADRKGM YALPQDFRML SQRVTEVLQN VFFASRFDET KFHTTLRGIY FVSSCQPADV ELLNNNTLIQ KWRNVINHKK PLSPADLSQK SDNEDRFISD VAYGKQYFLK QLFSDVITKD ADLVSYNLKV QSKYRFQNLL GHAACIGLAV WLVWAFLVSF QHNEGYLQAT GAKLSQLEST VMSYAKTSNE QILPALLNAT QQLPEYGTLD VANPELDWRY GLYTGSAISQ GANTLYQFFL QKYLFPMVEH QSEVALRKTM HSGQSEEVYA ALKLYLMLTG EGKFDRQYMI EHVTQDWQKS GKIEPYEEKS IFVGHLNTLF TLKDWRQYGQ PADSELIKQA RAILAEKTVT ARLWGRIQSR LLADAPANMT LRKMVGEHAT QVFTLSDDEL LHEGIPGLYT YAGYHEVVKK KLTPLLMLLQ EEDRWVMAQS LSSSLDPLTL RQDVLVMYLQ GYAAYWKRFL SSVRLISVDA DSAEYAQGLS LDIALLRTLV SENSPLLNLA RQAVKETTLA EKEKAITDEI NIRTQGQLLS QAKKLQETIA FRENKLIKEW VDNRFESLRV FVNGEQSADA PGGNNLSVLQ GTQMSRIIGT LNDQYTRFVV YNSAFEYGDI PPLSQDGERI AVESQTWPDP FRNIIAPLLT GSSQKFENKV ITHTSKAIDM GVGEICRNTL QGRYPFAESE QIVSLNDFER FFGTDGTVDS YFKKNLESKV DTSSIPWRYK GSVSSEGLAF FEQAAMIRNV LFNTNDGKKM ALDFSVSVRY LAPTITQLIM NFDGNTVRYS HGPVTPAFFK WPGLRQGTIV SLTAQRQKAS AMPDILFRGP WALLQWADQA DEIRDEANGK QTLTYLMGKD RVELEVSGLT HGGETISDLL RDFKCPSVND MNGIW
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