| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1484 |
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| Symbol | |
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| ID | 6090916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 1642487 |
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| End bp | 1643863 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641596553 |
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| Product | type VI secretion system OmpA/MotB family protein |
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| Protein accession | YP_001720230 |
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| Protein GI | 170023725 |
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| COG category | [N] Cell motility
[S] Function unknown |
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| COG ID | [COG1360] Flagellar motor protein
[COG3455] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.287067 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGACA GCAGTGATTT GAACCTTGGG GGCTCAATGC CTCCTTTTGA TCAAAGCAGA
AATGTGGATG AGAGTCCGCA GGCATTAGGC CGGTTCTTGC TTGATGAACC AATGACATAC
CCAGATAGCA CTCAGGATAA TGCGGCCTTC ACTAGAGAGG CCCCTCATTC TGGTGCGGCA
CAGCAATATG ACACGACCCT CTTACGGGGT GAAAGTGTGC AACAGCGTGT CGCTAAAGTA
CTCGCATCTT CAACGCCATT ATTGGAAGCG GCACAGCCAC TATTACGTGC CTTGAGCGAG
ATGCCCGCGC ATATTGGGGA TGTTTCACAG GTTCATATAT TAAAACAAAG CCTTAAAAAT
GAGATCACCC TCTTTAGTGT GGTGTGTGAT GAAGCGGATA TCTCATGGAA AAAAATGGCT
ATCGTCCGCT ATTGCCTGTG TACTGCGTTG GATGAAGCCG CTCACACGAT GTCGTGGGGA
ATGATGGCAG GTTGGTCACA AAGCAACCTG TTGAACCATT TTGAAGGCGA TAATGACGGC
GGGAATAAGT TTTTCTTATT GGTCGGCCGT CTCTCTATGA GCCCGCATGA ATATGCGGAT
GGTTTAGAGG TTTTGCTGCG CATTTTAGGG CTCGGTTTTG AGGGGCGCTA CAGCATTATC
GAAGATGGTG ATCGGCAATT AACTAAAATA CGCCAAGGGT TGCTGACGCT GCTCCAAAGT
ACCCGAGACA CGATCCCTCC GGCACTTTCT CCGCATGGGT TGATCGCACA TCAAAACAGA
AGACGGCGGG GCATTTTTGT TCCGGTGCGC GTATCCATGC TGTTGTGTGG TTTCCTCATT
GTCGCGACCT TTATTGGATG TAAATACTTT CTCTCGGTAC CGGAAAGTGA CTTGCTAAAA
AGAATGGGAG CATTGCAACG TGTGGTTGTG ACGCCACCCG TTGCCGCACC AAAACTTCGA
CTGTCTATTT TATTAAAAGA TGAGATAGCG AAGCAGTTAG TCAGTGTTGA TGAAACGAGC
AACAACAGCA AAGTCATCTT TAAAGGCGAC TCTATGTTTA TGGTCGGCTC GGATAACGTC
AGACCTGAAA TGATTGACGT AATTAAACGC GTCGCGCAGG AAGTGCATCG CGTTAAAGGG
GCAATCCTCA TTGTCGGGCA TACAGACTCT ATGCCGATTA ATAAACCCGG CTTCCCTAAT
AACCAGGTAC TTTCCGAAAA ACGCGCGGCC AATGTTGCAC GCTATATGGA ACAGGCCGGT
ATTCCAACCG ACAAAATTCG GTTTGAGGGC AAGGGGGAAA CGCAACCGGT TAGCAGCAAT
GACGATGCGA CAGGACGTTC GCAAAACCGC CGCGTAGAAA TTTTTGTTAA TTATTGA
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| Protein sequence | MSDSSDLNLG GSMPPFDQSR NVDESPQALG RFLLDEPMTY PDSTQDNAAF TREAPHSGAA
QQYDTTLLRG ESVQQRVAKV LASSTPLLEA AQPLLRALSE MPAHIGDVSQ VHILKQSLKN
EITLFSVVCD EADISWKKMA IVRYCLCTAL DEAAHTMSWG MMAGWSQSNL LNHFEGDNDG
GNKFFLLVGR LSMSPHEYAD GLEVLLRILG LGFEGRYSII EDGDRQLTKI RQGLLTLLQS
TRDTIPPALS PHGLIAHQNR RRRGIFVPVR VSMLLCGFLI VATFIGCKYF LSVPESDLLK
RMGALQRVVV TPPVAAPKLR LSILLKDEIA KQLVSVDETS NNSKVIFKGD SMFMVGSDNV
RPEMIDVIKR VAQEVHRVKG AILIVGHTDS MPINKPGFPN NQVLSEKRAA NVARYMEQAG
IPTDKIRFEG KGETQPVSSN DDATGRSQNR RVEIFVNY
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