| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1477 |
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| Symbol | |
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| ID | 6089138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 1634085 |
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| End bp | 1636757 |
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| Gene Length | 2673 bp |
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| Protein Length | 890 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641596546 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_001720223 |
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| Protein GI | 170023718 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.432789 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACCGTA CAGATATAGC GTGCTACATA GAAAATAATA TCGGCAAATT AAATTATTTA
TCCTACAAAG CTTCATTGAG CGTTGCGGTT ATTTTTATAG GCTCTGTTTT ACTCGTAACT
AAGAGTATCT CTGCCGTACC AATGTCTCAG GATACAAATG AGAGCGCAGC AGTGATACCC
GTTGAGTTTA ACGCCGACTT TATTCACGGT GGTGGGGTCG ATGTCATGCG ATTTATGCAT
GAAAACCCTG TTGCACCAGG AGTATACGAT GTCACCGTCA TCATTAATGG CAAAAATCGC
GGTAAACACC GTATCCGCTT TGAATTAAGC GAAGGGGAAT CTACCGCAGA ACCTTGTTTT
ACCTTGGAAC AGCTTGATTC TATTGGCCTG AAAATTGAAA CAAGCGATAC AGATTTATTA
GTAAACGGAA AAGCAGCACC CAAAGATCAG TGTTACAACT TAAGGGCATT GATTAAAGAC
AGCCATGTTA ACTATAACTC CGGTGATCTT GAACTTTCAC TCACCGTACC GCAGTTTAAT
TTGGTGCATC ATCCGCGTGG GTATATTGAT TCCAGTTTGT GGGATGCGGG TGGGACAGTT
GGTTTTCTGG ATTACAACAG TAATGTTTAT AGCATCTTTA ATGGCCGCTC TAACAGCGAT
GTAGGTTCAG ATAACTCAAA TAGCTACAAC AGTAATATTG GGCTATCAGC CGGTATTAAT
CTTGGTGAGT GGCGGTTCAG GAAGCGTCTT AATACTACCT GGTCGAATAG CAGTGGTATG
CACACTCAGA ATCTGTATGG GTATGCCGCG ACAGATATTA CCGCGTTAAA AAGTCAATTA
ACGATTGGGG ATACCAATAC CCAAGGGAGT TTATTCGACA GTTATGCATT ACGTGGTGTG
CTATTGGCAT CAGATACTCG GATGTTGCCG GAGGGAATAC GTAATTACTC TCCTATCGTC
AGAGGGATAG CTGAGACAAA TGCCAGAGTG ACGGTGACGC AGCGCGGGCA AATTATTTAT
GAAACGGTGG TCACACCGGG AGCCTTTGAA CTGACCGATA TCGGCACGAT GTCGTACGGC
GGTGATTTAC AAATGACGAT CACGGAGTCT GATGGACGAA CGCGTATCCA AAGGATCCCG
TTTTCAGCTC CCCCGATGTT GCTTTACCAA GGGGTGTCCC GGTTCGATTT TTCGGCAGGC
CAACTGAATG ACAGTTCGAT AAACCATAAT CCGGCGATTG TCCAAGGGGC ATACCATTAT
GGTTTGGGAA ATACGTATAC CCTCTATGGT GGGGCGCAGG TTGCTGAGAA TTATCGTTCG
GTTGCGATAG GTAACGCGTT CAATACCCCG TTGGGAGGGG TATCGATGGA TATCACACAT
GCTAAAAGTG AATTAGCGGG TGATCGTCGC TCCAGCGGTA ATAGCTATAA AATTGATTAC
TCCAAATACG TAGGAGAAAC CGATACCAAC CTGACATTGG CCGCCTATAG ATACTCTTCC
GGTGGGTATT ACAGTTTTAG GGAAGCCAGT CTGGATCGTT ATGGGAACAG TAATGGGATT
GATGAAATTG ACTTTCGTAC CCGTAATCGG TTGTCACTCA GTGTCTCCCA ACGCGTAGCG
GATAATATGT CAGTTAACCT GAACAGCAGC CTTTATAGCT ACTGGGGCAA TCAGGATGCA
TCACAACAAT ATTCGGTGGG TTTTAACCAT TCACTGCGCT ATTTCTCTTA TACGGTGAGT
GCGATACGCA CCAGTAATAG CGGTAATAGC AGTAATGGCG ACAATGATCG GGAATATGAA
AATAGTTATA TGCTCGCGGT CAGCATACCT ATTGGTGGGA GTGGGAAGAA TAAACCGCTG
TTTAGTTCGC TCTCGACCAT GGTTAGCCAT AGTGAAGCCG GTGATACACA GTTACAGCTG
ACTACGAGTG GTAGCCGGGG TGATCAGAAC GAGTTGACCT ATGGAATAGG TACGTCATAT
GGCAATCGTA ATGATGCGTC TTCTGAGCAA TCTGTGATAG GGAATATAGG TTATCAGTCC
TCGGTGGGCC AACTGGGTAT GACAGCGTCA GCCAATAATA ATGCATCACG GCAGCTTTCT
GTTTCGGCAA GCGGCAGCCT GGTGGCTCAT CAGGGCGGCG TGATAGCGGG CCCACGACTT
GGCGATGCGC CTTTTGCCAT CATCAATGCT CAGGGTGCCG GAGGGGCTAA AGTGTTTAAT
GGCCGCGGTG CAAAGATTGA TAGTAATGGA TATGCGCTGG TGCCATCACT GACACCGTAT
CGGGAAAATA CCATTGCGAT TGATTATAAA GACTTGCCTG AGACAGTCGA TATTCTGGAG
AACCATAAAG TGGTGGTACC CAGAATGGGC GCGATGATCC CAGTCAAGAT GAAAACTATG
ACAGGTAATC CGATGATGCT TATTGTCAGG GATGAAAATA AAGAGTTTCT TCCTATCGGC
ACTGATTTAT TGGATGCGGA TGGGGTGAGT CAAAGTATTG TTGGGCAAGG TGGAATGGCA
TTTATTCGTG GATGGGATCC TGTATCGCAA CCAATTACAG CAACCTTAAA TGGCGGCATA
GATAAATGTG TCATTAAACC TGATGCGAAA ATCGATACTG CTACAAAGAC AGCGCAAATA
ATACAGTTGG AGGTGATATG TCTTCGTCGC TAA
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| Protein sequence | MNRTDIACYI ENNIGKLNYL SYKASLSVAV IFIGSVLLVT KSISAVPMSQ DTNESAAVIP
VEFNADFIHG GGVDVMRFMH ENPVAPGVYD VTVIINGKNR GKHRIRFELS EGESTAEPCF
TLEQLDSIGL KIETSDTDLL VNGKAAPKDQ CYNLRALIKD SHVNYNSGDL ELSLTVPQFN
LVHHPRGYID SSLWDAGGTV GFLDYNSNVY SIFNGRSNSD VGSDNSNSYN SNIGLSAGIN
LGEWRFRKRL NTTWSNSSGM HTQNLYGYAA TDITALKSQL TIGDTNTQGS LFDSYALRGV
LLASDTRMLP EGIRNYSPIV RGIAETNARV TVTQRGQIIY ETVVTPGAFE LTDIGTMSYG
GDLQMTITES DGRTRIQRIP FSAPPMLLYQ GVSRFDFSAG QLNDSSINHN PAIVQGAYHY
GLGNTYTLYG GAQVAENYRS VAIGNAFNTP LGGVSMDITH AKSELAGDRR SSGNSYKIDY
SKYVGETDTN LTLAAYRYSS GGYYSFREAS LDRYGNSNGI DEIDFRTRNR LSLSVSQRVA
DNMSVNLNSS LYSYWGNQDA SQQYSVGFNH SLRYFSYTVS AIRTSNSGNS SNGDNDREYE
NSYMLAVSIP IGGSGKNKPL FSSLSTMVSH SEAGDTQLQL TTSGSRGDQN ELTYGIGTSY
GNRNDASSEQ SVIGNIGYQS SVGQLGMTAS ANNNASRQLS VSASGSLVAH QGGVIAGPRL
GDAPFAIINA QGAGGAKVFN GRGAKIDSNG YALVPSLTPY RENTIAIDYK DLPETVDILE
NHKVVVPRMG AMIPVKMKTM TGNPMMLIVR DENKEFLPIG TDLLDADGVS QSIVGQGGMA
FIRGWDPVSQ PITATLNGGI DKCVIKPDAK IDTATKTAQI IQLEVICLRR
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