Gene YPK_1406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1406 
Symbol 
ID6091046 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp1549134 
End bp1550012 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content49% 
IMG OID641596470 
ProductRpiR family transcriptional regulator 
Protein accessionYP_001720153 
Protein GI170023648 
COG category[K] Transcription 
COG ID[COG1737] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAAACTG GTGCTCCCCG CTTTAAGCCA GGTAAAATTC TTGATGCCTT GGGTGCGATG 
CAAAATAGCC TGACTCGTTC TGCTCAGCGT ATTGCTGCGT ATATTTTGGC GCAACCGGCT
CAGGTTACCC AATTATCTAT TGCTGATCTC TCGGCACTCA CACAGGCCGG TGAAGCGACC
ATTATTCGTT TCTGTCGGAC ACTGGGTTAT AAAGGGTTTC AGGATTTCAA AATGGACCTG
GCCATTGAAG TGGCCACCCG CCATAACAGT GAAAACAGCC TGTTAGATGC CGATGTCCAA
GAGGGTGACG ATACGCTGGC GATCGGCAGC AAATTACAAT CCGCTATCAA TAATGTTTTA
TCTGAAACAC TTAATTTGCT TTCTATTGAG AGTGTTGAAC AGGTGGTCAA ATTGCTGCGT
CCTGCGGATC GCATCTGTAT TTTTGGTGTT GGCTCCTCGG GGATCACTGC GGAAGATGCC
AAAGGCAAAC TAATGCGCAT CGGCCTGCGG GTTGATGCTG CGACAAATAA TCACTTCATG
TATATGCAAG CCTCTCTTAT GAACCCTGGT GATGTTGCCA TTGGTATCAG TCATTCGGGG
ACCTCGGCTG AAACTGTGCA GGCCCTCAAA TTGGCAAAAG AGGCTGGGGC GACGACAGTG
GCGTTGACGC ATAATATGGG GTCACGGATC ACTGAATTAG CCGATTATGT CCTGATCAAT
GGTAACCGGC AGGGGCAATT GCAGGGGGAC TCCATCGGTA CAAAAATCGC ACAATTGTTT
GTGTTGGATC TGATTTACGC CTTATTGGTC AAAGCTGATC CGGCGCAGGC GGAGAGTATT
AAACGCAAAA CAACCCAAGC GGTTAGCCAA AATGGATGA
 
Protein sequence
MKTGAPRFKP GKILDALGAM QNSLTRSAQR IAAYILAQPA QVTQLSIADL SALTQAGEAT 
IIRFCRTLGY KGFQDFKMDL AIEVATRHNS ENSLLDADVQ EGDDTLAIGS KLQSAINNVL
SETLNLLSIE SVEQVVKLLR PADRICIFGV GSSGITAEDA KGKLMRIGLR VDAATNNHFM
YMQASLMNPG DVAIGISHSG TSAETVQALK LAKEAGATTV ALTHNMGSRI TELADYVLIN
GNRQGQLQGD SIGTKIAQLF VLDLIYALLV KADPAQAESI KRKTTQAVSQ NG