Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1304 |
Symbol | |
ID | 6091090 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 1435392 |
End bp | 1435871 |
Gene Length | 480 bp |
Protein Length | 159 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 641596372 |
Product | Hcp1 family type VI secretion system effector |
Protein accession | YP_001720055 |
Protein GI | 170023550 |
COG category | [S] Function unknown |
COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.543696 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTAACT TAATTTATGC AAGTATTGAT GGCGAAAAAC AAGGGTTGAT ATCGTCTGGC TGCTCAACGC TTGACTCTAT TGGTAATCGA TGTCAGTTGG GGCATGAGGA TCAAATATAT GTCTATGGGT TTGATCATAA TATAGCCAGA GCACAAAATG TCGCGCATCA GCCAATCATA ATAACCAAAC CTATTGACAA ATCATCGCCT TTGCTAGGGA TGTCTATATC AAATAATGAA AAACTACAAA TAGTATTATA TATGTACAGG GTAAATTCAT CGGGTTCCTT AGAGGTGTTT TATACAATAA AACTGAAAGA TGCCTATATC TCAAATATTT CTCAACATTG CCCAAATGCG CTGACACATA ATGATATTCA GCCCTATGAA ATCATATCAA TTTCGTACAA AAGCATTGAT TGGGAGCACA ATATTTCTGG GACATCTGGC TATAGCATAT GGGATGAAAG AGTTTATTGA
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Protein sequence | MANLIYASID GEKQGLISSG CSTLDSIGNR CQLGHEDQIY VYGFDHNIAR AQNVAHQPII ITKPIDKSSP LLGMSISNNE KLQIVLYMYR VNSSGSLEVF YTIKLKDAYI SNISQHCPNA LTHNDIQPYE IISISYKSID WEHNISGTSG YSIWDERVY
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