Gene YPK_1189 details

Gene Information

• Locus tag: YPK_1189
• Symbol: rnc
• ID: 6088135
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 1325793
• End bp: 1326473
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 641596257
• Product: ribonuclease III
• Protein accession: YP_001719940
• Protein GI: 284988625
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.17286
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCCCA TCGTAATAAA CAGGCTGCAG CGGAAGCTGG GCTACACTTT CCAACAGCAG 
GAGCTCTTGC TGCAAGCACT GACTCATCGT AGCGCCAGCA GCAAACACAA TGAGCGTTTG 
GAGTTCCTGG GTGACTCTAT ATTAAGTTTT GTTATCGCCA ATGAGCTATA TCGCCGTTTC 
CCTCGCGTTG ATGAAGGGGA TATGAGTCGT ATGCGGGCCA CATTGGTTAG AGGGAATACA 
CTTGCCGAAA TGGCCCGTGA ATTTGACCTT GGCGAATGTT TACGCCTTGG GCCGGGTGAA 
TTGAAGAGTG GTGGTTTTCG CCGCGAATCA ATTTTAGCCG ATACGGTAGA AGCCTTAATT 
GGCGGTGTAT TCTTAGATAG CGATATCCAT ACGATTGAAC GGCTGATCCT CGAGTGGTAT 
CACAGTCGGT TAGAGGAAAT CAGCCCTGGT GATAAGCAGA AAGACCCAAA AACGCGCTTG 
CAAGAGTATT TGCAGGGCCG TCATCTGCCA TTACCTTCAT ATCTGGTCGT GCAGGTTCGC 
GGCGAAGCAC ATGACCAGGA ATTTACTATC CACTGCCAGG TGAGTGGCTT GAATGAACCA 
GTAATAGGTA CTGGCTCAAG CCGTCGTAAA GCTGAGCAGG CGGCAGCGGA ACAAGCGCTG 
AAACAGTTGG AGCTTGAATG A 

 

Protein sequence

MNPIVINRLQ RKLGYTFQQQ ELLLQALTHR SASSKHNERL EFLGDSILSF VIANELYRRF 
PRVDEGDMSR MRATLVRGNT LAEMAREFDL GECLRLGPGE LKSGGFRRES ILADTVEALI 
GGVFLDSDIH TIERLILEWY HSRLEEISPG DKQKDPKTRL QEYLQGRHLP LPSYLVVQVR 
GEAHDQEFTI HCQVSGLNEP VIGTGSSRRK AEQAAAEQAL KQLELE