| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1090 |
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| Symbol | |
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| ID | 6087862 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 1228634 |
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| End bp | 1229317 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641596156 |
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| Product | lipoprotein involved with copper homeostasis and adhesion |
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| Protein accession | YP_001719844 |
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| Protein GI | 170023339 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG3015] Uncharacterized lipoprotein NlpE involved in copper resistance |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.930718 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGAGTAAAT TAACGATAAC GCTACTTTTG GCAGTAGGTG CGCTGTCATT ATTAGGCTGT
AATAATCGCT CTCAACCTGC TGAACAGGTT TTGCAACCAA TGCAGCAGAG CTATCAGGGC
GTATTACCTT GTGCGGATTG CAGTGGCTTA GACACTTCTT TGTTCCTCGA TAGTGATGGG
ACTTTTATCT TGAAAGAAGT TTATCTCGGC ACTAAAGATG GCGACCAAAC TTTTGCAGAA
TATGGTAAAT GGGCACGTAC TGCTGATAAG TTAGTGTTAA CCAACGGTCA GGGAGAAAAA
CGTTACTTCC ACCCTGTCGA TAAAAGCTTG GTGATGCTCG ATCAGCAAGG TTTACCCATT
AAATCGACAC TGAATTATCA GTTGGAACCC AGCGACCAGC CGTTATCCAA AACGCCAATG
CCACTAAGTG GTATGTATAA ATACTTTGCT GATGCCGCCA TATTTACTGA TTGTGTAACG
GGTAAGGCGT TCCCGGTAGA GAATAATATC GAACTGGAAA CCGGGTATTT AAACGCTCGC
AGAAACCCTG GAGAACCTGT GTTTTTGACC CTCAATGGGT ATTTTGATTC AAGGCCATCA
ATGGAAGAAG GGCGAACGAA TAAAACGCTG ATTCCGGAGG GGGATATTCA GTTTAATGCC
AATAAAAGTT GTGAGAAAAA ATAG
|
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| Protein sequence | MSKLTITLLL AVGALSLLGC NNRSQPAEQV LQPMQQSYQG VLPCADCSGL DTSLFLDSDG
TFILKEVYLG TKDGDQTFAE YGKWARTADK LVLTNGQGEK RYFHPVDKSL VMLDQQGLPI
KSTLNYQLEP SDQPLSKTPM PLSGMYKYFA DAAIFTDCVT GKAFPVENNI ELETGYLNAR
RNPGEPVFLT LNGYFDSRPS MEEGRTNKTL IPEGDIQFNA NKSCEKK
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