Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_0987 |
Symbol | |
ID | 6090415 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 1109144 |
End bp | 1109899 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641596050 |
Product | 2-deoxy-D-gluconate 3-dehydrogenase |
Protein accession | YP_001719741 |
Protein GI | 170023236 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAACTAT TTGATTTGAA TGGAAAAGTA GCAATTATCA CCGGATGTAA TACGGGGTTG GGCCAAGGCA TGGCCATCGG CCTGGCAAAA GCCGGTGCAG ATATTGTTGG TGTGGGAGTC GCTGAAGCCC CGGAAACCCA GGCACAGGTT GAAGCACTGG GGCGTAAATT CCACTTCATC ACTGCTGACC TGATACAACA AAAAGACATT GATAGCATCG TCAGTCAGGC GGTGGAAGTG ATGGGGCATA TTGATATTCT GATCAACAAC GCCGGGATCA TTCGTCGTCA GGACCTGCTG GAGTTTGGCA ACAAAGATTG GGACGATGTG ATCAATATTA ACCAGAAAAC CGTGTTCTTC CTGTCGCAAG CCGTGGCGAA ACAGTTTGTG AAGCAGGGCA ACGGCGGCAA GATCATCAAT ATCGCCTCCA TGTTGTCATT CCAGGGGGGG ATCCGCGTGC CCTCTTACAC CGCCAGTAAA TCCGCCGTCA TGGGCTTAAC CCGTGCATTG GCGACAGAGC TGTCGCAGTA CAATATTAAC GTAAACGCGA TTGCGCCGGG TTATATGGCA ACCGATAACA CCGCCGCACT GCGCGCAGAC ACCGCCCGCA ACGAGGCTAT TTTAGAGCGG ATCCCCGCGT CCCGTTGGGG AACACCGGAT GATTTAGCGG GCCCGGCGAT TTTCCTTTCG TCCTCTGCCA GCGACTATGT GACCGGGTAT ACATTAGCAG TGGATGGCGG CTGGCTGGCG CGTTAA
|
Protein sequence | MQLFDLNGKV AIITGCNTGL GQGMAIGLAK AGADIVGVGV AEAPETQAQV EALGRKFHFI TADLIQQKDI DSIVSQAVEV MGHIDILINN AGIIRRQDLL EFGNKDWDDV ININQKTVFF LSQAVAKQFV KQGNGGKIIN IASMLSFQGG IRVPSYTASK SAVMGLTRAL ATELSQYNIN VNAIAPGYMA TDNTAALRAD TARNEAILER IPASRWGTPD DLAGPAIFLS SSASDYVTGY TLAVDGGWLA R
|
| |