Gene YPK_0854 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_0854 
Symbol 
ID6090921 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp977349 
End bp978218 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content50% 
IMG OID641595916 
ProductMscS mechanosensitive ion channel 
Protein accessionYP_001719608 
Protein GI170023103 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0668] Small-conductance mechanosensitive channel 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.11552 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGAAC TAAACGTAGT TGAAGGGATC AATAATGCAA GCACCTGGTT GGCGAATAAC 
CAGGACTTAC TGATCCAATA CGCAGTCAAT ATTATTGCCG CGTTATTGAT CCTGATTGTC
GGTTCGATCA TCGCTAAAGT GCTATCTGGC ATGCTCAATC GGGTGATGAG ATTGCGTGGC
ATTGATGTCA CCGTTGCCGA CTTCTTATCA GCGATGGTGC GTTACAGCAT TCTGGCTTTC
ACCATTGTGG CGGTACTGGG GCGGCTGGGT GTACAAACCG CATCGGTCAT TGCGGTCATT
GGTGCTGCGG GTTTGGCCGT TGGTTTAGCC CTACAAGGGT CGCTGTCTAA CTTTGCTGCT
GGTGTGTTGC TGGTCGCCTT CCGTCCGTTT AAAGCGGGTG AGTACGTCGA TCTGGGCGGT
GTGGCCGGGA CGGTGGTGCA GGTGCAGATT TTCTCAACCA CCCTACGTAC GGTTGATGAC
AAAATCATTG TGGTACCAAA TGGCAAAATT ATTGCCAACA ATATTATTAA TACCAGCCGC
GAGCCGAACC GCCGTACCGA CATGATTGTC GGTGTGGCAT ATGATGCCGA TATTGATGTG
GTGAAAAAGG TTCTTGGTGA CATCATCGCA GCTGATAGTC GGATCATACA CGAGAAAGGG
GTGACGGTGC GCTTGAATGA AATGGCACCG TCCTCACTGA ATTTTGCTGT TCGTGTTTGG
ACGACCAATG GTGATGCGCA AGAGGTGTTT TGGGACTTGA CTGAAAACTT CAAGCGGGCG
CTGGATGCGC ACAAAATTGG TATCCCTTAC CCACAAATGG ATGTGCATTT GCATCAGGTG
GCAAAAGCCG AAGCCGAGAA GCCGGAGTAA
 
Protein sequence
MEELNVVEGI NNASTWLANN QDLLIQYAVN IIAALLILIV GSIIAKVLSG MLNRVMRLRG 
IDVTVADFLS AMVRYSILAF TIVAVLGRLG VQTASVIAVI GAAGLAVGLA LQGSLSNFAA
GVLLVAFRPF KAGEYVDLGG VAGTVVQVQI FSTTLRTVDD KIIVVPNGKI IANNIINTSR
EPNRRTDMIV GVAYDADIDV VKKVLGDIIA ADSRIIHEKG VTVRLNEMAP SSLNFAVRVW
TTNGDAQEVF WDLTENFKRA LDAHKIGIPY PQMDVHLHQV AKAEAEKPE