Gene YPK_0572 details

Gene Information

• Locus tag: YPK_0572
• ID: 6087864
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 631066
• End bp: 633042
• Gene Length: 1977 bp
• Protein Length: 658 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 641595634
• Product: filamentous haemagglutinin outer membrane protein
• Protein accession: YP_001719328
• Protein GI: 170022823
• TIGRFAM ID: [TIGR01731] adhesin HecA family 20-residue repeat (two copies); [TIGR01901] filamentous haemagglutinin family N-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAAAA ACCTGTACCG TATCGTTTTT AATCAAGCGC GCGGCATGTT GATGGTGGTC 
GCCGATATTG CGGCCTCCGG TCGGGCTGCA TCGTCGCCAT CGTCAGGTGT TGGGCATACT 
CAGCGCCACC GGGTCAGTGC CTTATCACCA TTGAGTTTTC GTCTGTTAAT GGCTTTGGGG 
GGCATCTCGT TATCCGCTCA GGCCGCAATT GTGGCGGATG GCAGTGCGCC GGGTAATCAG 
CAGCCGACCA TTATCAGCAG CGCCAACGGC ACGCCTCAGG TTAATATCCA AACCCCCAGT 
AGCGGCGGTG TCTCGCGCAA CGCTTACCGC CAGTTTGATG TCGATAATCG CGGGGTGATC 
CTCAATAACG GTCGCGGTGT CAACCAGACC CAGATTGCCG GATTGGTTGA TGGTAATCCG 
TGGCTGGCGC GGGGCGAAGC CAGCGTGATC CTCAACGAAG TCAACAGTCG CGACCCGAGT 
CAGCTCAACG GCTATATCGA AGTGGCCGGA CGTAAAGCGC AGGTGGTGAT CGCTAACCCA 
GCAGGCATTA CCTGCGAGGG CTGTGGTTTT ATCAACGCCA ACCGCGCAAC CCTCACCACC 
GGTCAGGCGC AGCTCAATAA CGGCCAACTC ACTGGCTACG ATGTTGAACG GGGTGAAATT 
GTTATTCAGG GAAAGGGCCT GGACAGCCGT GGTCAGGATC ATACCGATCT GATCGCCCGT 
TCCGTTAAAG TAAATGCGGG CATCTGGGCC AATGAACTGA ATATCACTAC CGGGCGCAAT 
CAGGTTGATG CCGCACACCA GAATATCAAT ACCAACGCCG CCGATGGCCG CCCTCGTCCT 
GCCGTGGCGG TCGATGTGGC TAATTTGGGG GGGATGTACG CCGGTAAAAT CCGCCTAATC 
GGTACTGAAA CCGGTGTTGG CGTGCACAAT GCGGGCGAGA TAGGGGCTTC TGCAGGTGAT 
ATCGTGATTA CGGCCGACGG TATGCTGGTG AACCGCGGCC AGATCAGCAG TGCTCAACAA 
CTGGCGGTGA ATACCCCCTC AGGCATAGAG AATAGCGGTG TGCTCTATGG GAAGGGCAAT 
ACCCAACTGA CCACGGCGGG TAAACTGAGC AACAGTGGCA CGGTCGCGGC GGCGGGTGAC 
ACCTTGATCC GCGCGGCAGA GGTTAACAGC AGCCGTAATT CTGTTTTGGG TGCTGGCATT 
AAATCCGATA ACAGTGCCAT TACCCGTGGC ACCCTTGATA TTAAAGCCCG TGGGCAGCTA 
ACCGCCCAAG GGAAAAATAT TAGCGGCACG GCGCAGACAT TTAATGCGAA CCGTATTGAT 
CTCAGCGGTA GCCAAACTCA GAGCGGTGAT CTGACGTTCA CCACCGAAGG TGGCGACATC 
GATTTGACAG GGGCTAACCT GTTCGCCAAT CGTCGTCTGT CTGTTTCGAC CCCTTCTTTG 
CTACGCACCG ATAAAGCTAA CTTGTTCGCG GAGCAAATCG CGCTCGACGC ACAAGCGCTC 
GCCAATGTGG GTGGCGTGAT AACGCAAACT GGGCTGACCG ACTTCAACTT GAATCTACCG 
GGTTATATTG ATAACCGTGG TGGCTCTCTC CTCACCCGCG GCAACTTTTT GCTGCAAGCT 
GAACACTTGA CCAGTAATAG CCAGAGTTTA CTGGGTGCTG GCATACAGAG TGATGGCAAA 
CTGGCTCCGC GTGGTGATCT CAATGTCACT ACGCGGCACG CCTTGATTGC TCAAGGGAAA 
ACGCTAGCCG CAGGCACTCT GGCACTCTCC GGCAGCCGGC TTGATCTTAC TGATAGCCTG 
ACACAAGCCA AGTATATGCG GCTGACAGCC ACAGAAGGCG ATATTGCGTT AACCGGTGCC 
ACGGTGATGG CGGCTAACAC GTTGTTTGCG GATAGCCAAA TCAGACGGTT TATTGACTGG 
GCATGTTACA AAAACAACTC CTCAAATGAC AAAAGAAAAT ATCCGCTCAC TCAATAG 

 

Protein sequence

MNKNLYRIVF NQARGMLMVV ADIAASGRAA SSPSSGVGHT QRHRVSALSP LSFRLLMALG 
GISLSAQAAI VADGSAPGNQ QPTIISSANG TPQVNIQTPS SGGVSRNAYR QFDVDNRGVI 
LNNGRGVNQT QIAGLVDGNP WLARGEASVI LNEVNSRDPS QLNGYIEVAG RKAQVVIANP 
AGITCEGCGF INANRATLTT GQAQLNNGQL TGYDVERGEI VIQGKGLDSR GQDHTDLIAR 
SVKVNAGIWA NELNITTGRN QVDAAHQNIN TNAADGRPRP AVAVDVANLG GMYAGKIRLI 
GTETGVGVHN AGEIGASAGD IVITADGMLV NRGQISSAQQ LAVNTPSGIE NSGVLYGKGN 
TQLTTAGKLS NSGTVAAAGD TLIRAAEVNS SRNSVLGAGI KSDNSAITRG TLDIKARGQL 
TAQGKNISGT AQTFNANRID LSGSQTQSGD LTFTTEGGDI DLTGANLFAN RRLSVSTPSL 
LRTDKANLFA EQIALDAQAL ANVGGVITQT GLTDFNLNLP GYIDNRGGSL LTRGNFLLQA 
EHLTSNSQSL LGAGIQSDGK LAPRGDLNVT TRHALIAQGK TLAAGTLALS GSRLDLTDSL 
TQAKYMRLTA TEGDIALTGA TVMAANTLFA DSQIRRFIDW ACYKNNSSND KRKYPLTQ