Gene YPK_0571 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_0571 
Symbol 
ID6089565 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp629333 
End bp631021 
Gene Length1689 bp 
Protein Length562 aa 
Translation table11 
GC content54% 
IMG OID641595633 
Productpolypeptide-transport-associated domain-containing protein 
Protein accessionYP_001719327 
Protein GI170022822 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2831] Hemolysin activation/secretion protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGCGTT TTTATTATTC TATATTAGTG GCTGGCGTAT TATTGAAAAT AGTGGCTATT 
CCAGATGCCA GTTATGGCGC GGAATTAGCG CCCGTTCAAC AAAGTATTCA CCAACAGGAG
CGGCAACGGG CACTTGAAGA GCGCCTGGCT CCGCCGACGC CGGATGTGCG CTTATCTGCG
CCCTCGGCCT TTTTTAGACG TATTATTTTT CCGCTGGAGA CACCCTGCTT TGTTATTAAT
CGGATAAAAA TCAGTGGGGC CGAGCCATTA CCCCGTTGGT TGCCGTTGCA ACGCATTGCC
GATCAAGCGC AAGGCCAGTG TCTGGGGGCC AAGGGCATTA ACCTGCTAAT GAGTCAGATG
CAAAACCGTT TGGTCGATCA CGGCTATGTG ACTACCCGAG TGCTGGCCCC ACAGCAGGAT
TTAAACAGCG GCACGCTGGC GCTAAACGTC GTGCCCGGCA AAATACGCGG TGTGGAACTG
ACGCCAGACA GTAATAGGTA TGTCACGTTA TTCAGCGCTT TTCCTGCCCG TGCCGGGACG
CTGTTGGATT TACGCGATAT CGAACAAGGC TTGGAAAATC TACAGCGTGT TCCCACGGTG
CAAGCCAATA TGGTGTTGAT CCCAGGCTCT GCCCCCGGTG AGACGGATAT CATTCTGAAC
TGGCAACAGC GAAAAATGTG GCGGCTGGCC GCCTCACTGG ATGATTCGGG TACCCGCAGC
ACTGGCCGCT ATCAAGGGGG GGCGACGTTG TTTCTGGATA ACCCGCTTTC TCTGAGTGAT
CTTTTTTATG TCTCAGCTGG TGGCGCACTG CAACGCCGTG GCGATAAAGG CACGAATAAT
CTGACCGGCC ATTACTCATT GCCATTCGGT TATTGGACCG CAGGCATGAC CGCCAGCCGT
TATGACTATT ACCAGGCCGT TGCGGGCCTG AATGGCGATA TCAACTACCG AGGTGAAAGT
GAGAACGTGG CGTTCCAACT CAGCCGGTTG TTGCACCGTA ATGCCAGCCA GAAAACCACC
TTTACCTACG ATGTGCTAAC CCGCTCGTCG AAAAACTATA TCAACGATAC CGAAGTGGAA
GTGCAGCGCC GCCACACCTC GGCCTGGCGG ATCGGGCTAC AACACCGCCA CTTTATCTCG
CAGGCGATTT TGGATGCCGG TATCAGCTAT CAGCGTGGCA CCCGCTGGTT TGGTGCCATA
CCCGCGCAGG AAGAGTATTT CGGCGAAGCC ACCGCCTTGA GCAAAATTCT GCGATTGAAT
GCGCAACTGG ATATTCCTTT TGCGGTTATG GCGCAAAACC TCCATTACAA CCTGCAATAT
CAGCGCCAAA GTACCAACAC GCCACTGACG CCGCAGGATC AGTTCTCCAT TGGTGGCCGC
TGGTCGGTGC GTGGTTTTAA TGGTGAGCGC ACGCTGATTG CCGATCGCGG CTGGTGGGTG
CGCAATGATA TCGGCTGGTA TCTGCCGCTA CCGGGGCATG AGCTGTATGT CGGTGTGGAT
TACGGCGAAG TCGGTGGTCG TAGTGGCGCT TATCTGTTGG GCCGCCATTT GGCGGGCAGT
GCCGTCGGGG TACGTGGCAA CGTACTGAAT ACCCGCTATG ACCTGTTTGC GGGGAAACCG
CTCTCTAAAC CTAATGGTTT CAAAACCGAT TCGCTGGCGG TGGGCTTTAA CCTGAATTGG
CTGTACTGA
 
Protein sequence
MSRFYYSILV AGVLLKIVAI PDASYGAELA PVQQSIHQQE RQRALEERLA PPTPDVRLSA 
PSAFFRRIIF PLETPCFVIN RIKISGAEPL PRWLPLQRIA DQAQGQCLGA KGINLLMSQM
QNRLVDHGYV TTRVLAPQQD LNSGTLALNV VPGKIRGVEL TPDSNRYVTL FSAFPARAGT
LLDLRDIEQG LENLQRVPTV QANMVLIPGS APGETDIILN WQQRKMWRLA ASLDDSGTRS
TGRYQGGATL FLDNPLSLSD LFYVSAGGAL QRRGDKGTNN LTGHYSLPFG YWTAGMTASR
YDYYQAVAGL NGDINYRGES ENVAFQLSRL LHRNASQKTT FTYDVLTRSS KNYINDTEVE
VQRRHTSAWR IGLQHRHFIS QAILDAGISY QRGTRWFGAI PAQEEYFGEA TALSKILRLN
AQLDIPFAVM AQNLHYNLQY QRQSTNTPLT PQDQFSIGGR WSVRGFNGER TLIADRGWWV
RNDIGWYLPL PGHELYVGVD YGEVGGRSGA YLLGRHLAGS AVGVRGNVLN TRYDLFAGKP
LSKPNGFKTD SLAVGFNLNW LY