Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_0534 |
Symbol | |
ID | 6090835 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 587470 |
End bp | 588123 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641595596 |
Product | isoprenoid biosynthesis protein with amidotransferase-like domain |
Protein accession | YP_001719290 |
Protein GI | 170022785 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3155] Uncharacterized protein involved in an early stage of isoprenoid biosynthesis |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0305832 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAACAG TTGGCGTAGT GCTCAGTGGA TGTGGTGTTT TGGATGGCGC TGAAATCCAT GAGTCTGTCT TAACAATGCT GGCATTGGAT CGCGCGGGCG CAGAGGTTTT GTTTTTTGCG CCAGATAAAC CTCAACTTCA TGTTATTAAT CATATTACTG GTGAGATTGT TGCAGAAGAA CGGAACGTTT TAGTGGAGTC TGCCCGCATT GCCCGTGGCC TGATCACCCC CCTTTCTGCG GCTGATCCAG AGGTATTAGA TGCACTAATC GTACCGGGAG GTTTTGGGGT AGCAAAGAAC CTCTGCGACT TCGCCATTAA AGGGGTCGAA TGTTCCGTTG AACCCGATTT ATATAAGTTA ATTCAATTAA TGCATAAGTC CGGTAAACCA ATTGGATTGA TGTGTATTTC TCCGGTGATG CTGCCGAAGC TGCTGGGCAA ACCCATTCGA CTGACAATTG GTAACGATCC CGATACGATT GATGCCATTG AAATTATGGG GGGGGAGCAT GTTATTTGCC CTGCTGATGA CGTTGTCATT GATTTGGAAA ATAAAGTGGT GACGACACCG GCTTACATGT TGGCTGGTTC CATTTCAGAA GCGGCTAAAG GTATTGATAA ATTGGTGACG AAAGTCTTGG ATTTAACTGA ATGA
|
Protein sequence | MKTVGVVLSG CGVLDGAEIH ESVLTMLALD RAGAEVLFFA PDKPQLHVIN HITGEIVAEE RNVLVESARI ARGLITPLSA ADPEVLDALI VPGGFGVAKN LCDFAIKGVE CSVEPDLYKL IQLMHKSGKP IGLMCISPVM LPKLLGKPIR LTIGNDPDTI DAIEIMGGEH VICPADDVVI DLENKVVTTP AYMLAGSISE AAKGIDKLVT KVLDLTE
|
| |