| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0399 |
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| Symbol | |
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| ID | 6091006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 434601 |
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| End bp | 438134 |
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| Gene Length | 3534 bp |
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| Protein Length | 1177 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641595463 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_001719157 |
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| Protein GI | 170022652 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTGC CGTTCTTTAT ACGCATAGCC AAGCCCGCCA TTCCTCGCCT TAAAGCGTCA
ATACCGGTGG TATTGGCGTT GATGGCTTGT GCGGCACTCA TTTGGGTATG GATTTACGGA
CCCGAGTGGC AATTGGGGGA AAATTACCCG TTTGAGACAT TATTGAGCCG TTGGTTGGTC
ACGGCGGTAT TTGTTTTGGT GGCCGTTTGT TGGCTCAGCC TGAAAGTCAT GAGGCGAGTA
CAACACCTGG AAAAACTCCA ACTGCAAACG AAAATTCAGC TCGACGACCC CGTCAGTGCT
GATATCGAAC AACAAAACCA CTACCTCAAT GGCTGGAAGC ACCAACTTCA GCGCCATTTG
AACACCCCGG AATATCTGTA TCACCTGCCC TGGTACATGG TCATTGGTGC GCGCAATAGC
GGCAAAAGTA CACTGATCAA AGAAGGGTAT AAACTGACAG AGATCTCCGC ATCCGAGCGG
CTCCATGTGG AAGGCGCAGC AGATCTGCGC GTCCGCTGCT GGTTGGGGGA ACAAGCGGTT
ATTATCGATC CTGCGGGGGT GCTGATTGAA CAACCCACGA CACCGATCGC GGGCAAAGCA
TCACTCAACA GCCGCTTATG GCAAAGTCTA TTATCCTGGC TGATTGAACA GCGCCAGCGT
CAGCCGCTAA ACGGCATTAT TCTCACCGTC GATCTTCATC AGATGATGAC CGCGAATAAA
GCGCAGCGGG AGACGTACGT CGCTGATATT CATCAACGGC TGCAAGAGAT ACGGCTGTCT
TTGCACAGCC AGGTGCCGCT GTATGTGGTG TTCACCAAAA TGGACCTGCT GTACGGCTTC
GAGGCCATGT ACCAATCGCT GGATAAAGCC GAACGTGAAG CGGTTCTGGG GGTGACGTTC
AGCCTCAATG CGGCGGATCC GGACGTGTGG CGGACGGAGT TGAAACAGTT CTGGCAGCAA
TGGGTCGCAC AACTGAATGG CGCGATGCCG GACATGATGC TGAACAGTGT GGATGCCGGG
CAGCGTAGCC AGTTGTTTAG CTTCACTCGT CAGATGCAGG GCCTGCACGA TTACGTCGTG
CAACTGCTGG AAGGCATTCT GTACCGTGGA GAACATGCCC AGCCGCTGTT ACGGGGGGTT
TATCTCACGT CTGCCCAGCA ACGCGGGCAA ATGGACGATA TCTTTACCCA ATCTGCCGCG
GTGCAATATC ACCTTGCGCC ACAGGCCTTC CCGACCTGGC CGGTCTCGGA TACGACGCCG
TATTTTACCA AAGCGCTGTT TAATCAGGTG CTGTTGGCCG AACCCAATCT GGCCGGAGAG
AACGGTATCT GGCTGCAAAA AACGAGAAAG CGAATGTTCA TTTTCTCGGG GGTGGGTGCC
CTGGCCGCGC TGACCTTATG GGGCTACTGG CACTACTATC ACCAGCTTAA CTACCGGGCT
GGCGAAGAGG TATTAACCCA GGCAAAAACC TTCTTATCGA TCCCACCGCC AGAAGGCGAT
GACCGTTATG GCAATCTGCA ACTGCCGCTG CTAAACCCCA TCCGTGACGC CACGCTGGCT
TACGGTAATT ACCATGAACG CAGCCCGTTC CTGGCGGATA TGGGGTTATA TCAGGGCAAT
AATATCGGGC CTTATGTCGA AAGCACTTAC TTGCAACTCC TACAGCAACG TTTTGTCCCG
GCACTGATGA GCGGGCTGTT GGAACAACTG AACGCCGCAC CGAAGGGCAG TGAAGAGAAA
CTGGAAATTC TGCGGGTGAT GCGGATGTTG GAAGACGGCA GTGGCCGCAA TGCCGCGCTG
GTTGAACAAT ATATGAGCCA CCGCTGGAGC CAACAATTCA ACGGCCAGCG CGAGTTGCAG
GAGCAACTGT CGAGCCACCT GAACTACGCA CTGAAACACA CCGACTGGCA CGGCGCACGG
GAAAGTGGCG ATCAATATGC GATCAAGAGC TTTGTCCCGT ATCTCAGCCC GATCCAGTCA
GCGCAGCAAG AGTTGAGTAA ACTCTCGATC TACCAACGGG TGTATCAGAA CCTGCGGATC
AAAGCACAGG ATGCGTTGCC GCCCGCGCTC GATTTGCGCG ATCAGATCGG CGCAAGTTTT
GACGACATCT TTGTCTCCGG TAACGATCGC CTGCTGGTGA TCCCGCAATT CCTGACCCGT
AGCGGCTTAC AGAGTTACTT CATCAAACAG AACGATCAAC TGGTTGATCT CACGGTGATG
GACAGTTGGG TACTTAATCT CACCAAGAAC GTCGAATACA GCGAGGCAGA CCGCAAAGAG
ATCCATCGCC AGGTGACCGA ACAGTATCTT GGCGATTATA CCGCCACCTG GCGTGCGGCC
ATGAATAACC TGTCGGTCAG TGATTTTGAA GGCTTGCCAC AGGCGATCAG CGCCATTGAA
CAGGTGATCA GCGGGGAACA ACCTTTCCGC CGTGCACTGC AAACGCTGAG TGACAACACC
CGCTTGCCGG TTATCTCGGA TCTGATCCCC GCGAAGGAGC AGCAAGAGCT GCTGCAAAAA
CCCGATTACC TGCTGCTGAC CCGCATCAAC CGTGAGTTCT CCCCCGAAAC GGCGGTGCTG
GTGGAGAATG GCGATAAAGG CAGCGTGATC CAAAGTGTTT ACCAAAAACT GACCGAGCTA
CACCGCTATC TGTTGGCGAT CCAAAACTCG CCCGCGCCGG GCAAAGCGGC GTTGAAGGCG
GTGCAATTAC GTCTGGATCA AAACAACAGT GATCCGATTT TCGAAGTCCA GCAACTGGCT
AAAAACCTGC CGGAGCCGCT AAACCGCTGG GTGGGCGAAC TGGCAGAGCA AGCCTGGCGG
GTGGTGATGA TGGAGGCTAT CCAGTCACTG GAAGTGGAGT GGAATGAGAC GGTGATCAAA
CAGTATCAAA CCTACCTGGC CGGACGTTAT CCCTTCGATC CTCACGCGAA ACAGGATGTA
CCACTCAGTG AGTTTGAACG CTTCTTCGGG CCGAAAGGCA CGCTCGATGC ATTCTATCAG
CAGAACCTGA AACCGTTTGT CGAAAACAAC CTGACCGGTG GCAGCGATGG CGAATTGCTG
ATCCGGCCTG ATGTGCTACA GCAACTGGCG CAGGCGCGGA AAATTCGCGA CACCTTCTTC
TCGGCCCAAA ACGGCCTGGG CACACAGTTT GCGATTGAAC CGGTGCTGTT AAGTGGCAAC
AAGCGCCGCA GCGTATTGAA TTTGGATGGG CAATTACTGG ATTACGCCCA TGGTCGCAGC
GGCGTAGTGC ATCTGGTTTG GCCAAACTCG ATGCGTGCAG GAGTGGAAAG CAAACTGACG
TTAGTCCCGG ATGAGAGCGG CAAATCACCG CGCACCCTCA GCTTCAGCGG CCCTTGGGCG
CAATTGCGGC TGATCAACGC CGGTGAACTG ACCAATGTGG GCACCAACTC CTTCGATGTC
CGCTTCAAGG TTGATGGCGG CGAGATGACG TACCGCATCT TTGTTGATGA ATCCGACAAC
CCATTCGCGG GCGGTTTGTT CAGTAAATTC AGTCTGCCAG ACACTCTGTA TTGA
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| Protein sequence | MKLPFFIRIA KPAIPRLKAS IPVVLALMAC AALIWVWIYG PEWQLGENYP FETLLSRWLV
TAVFVLVAVC WLSLKVMRRV QHLEKLQLQT KIQLDDPVSA DIEQQNHYLN GWKHQLQRHL
NTPEYLYHLP WYMVIGARNS GKSTLIKEGY KLTEISASER LHVEGAADLR VRCWLGEQAV
IIDPAGVLIE QPTTPIAGKA SLNSRLWQSL LSWLIEQRQR QPLNGIILTV DLHQMMTANK
AQRETYVADI HQRLQEIRLS LHSQVPLYVV FTKMDLLYGF EAMYQSLDKA EREAVLGVTF
SLNAADPDVW RTELKQFWQQ WVAQLNGAMP DMMLNSVDAG QRSQLFSFTR QMQGLHDYVV
QLLEGILYRG EHAQPLLRGV YLTSAQQRGQ MDDIFTQSAA VQYHLAPQAF PTWPVSDTTP
YFTKALFNQV LLAEPNLAGE NGIWLQKTRK RMFIFSGVGA LAALTLWGYW HYYHQLNYRA
GEEVLTQAKT FLSIPPPEGD DRYGNLQLPL LNPIRDATLA YGNYHERSPF LADMGLYQGN
NIGPYVESTY LQLLQQRFVP ALMSGLLEQL NAAPKGSEEK LEILRVMRML EDGSGRNAAL
VEQYMSHRWS QQFNGQRELQ EQLSSHLNYA LKHTDWHGAR ESGDQYAIKS FVPYLSPIQS
AQQELSKLSI YQRVYQNLRI KAQDALPPAL DLRDQIGASF DDIFVSGNDR LLVIPQFLTR
SGLQSYFIKQ NDQLVDLTVM DSWVLNLTKN VEYSEADRKE IHRQVTEQYL GDYTATWRAA
MNNLSVSDFE GLPQAISAIE QVISGEQPFR RALQTLSDNT RLPVISDLIP AKEQQELLQK
PDYLLLTRIN REFSPETAVL VENGDKGSVI QSVYQKLTEL HRYLLAIQNS PAPGKAALKA
VQLRLDQNNS DPIFEVQQLA KNLPEPLNRW VGELAEQAWR VVMMEAIQSL EVEWNETVIK
QYQTYLAGRY PFDPHAKQDV PLSEFERFFG PKGTLDAFYQ QNLKPFVENN LTGGSDGELL
IRPDVLQQLA QARKIRDTFF SAQNGLGTQF AIEPVLLSGN KRRSVLNLDG QLLDYAHGRS
GVVHLVWPNS MRAGVESKLT LVPDESGKSP RTLSFSGPWA QLRLINAGEL TNVGTNSFDV
RFKVDGGEMT YRIFVDESDN PFAGGLFSKF SLPDTLY
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