| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0398 |
|---|
| Symbol | |
|---|
| ID | 6090107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 433181 |
|---|
| End bp | 434569 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641595462 |
|---|
| Product | type VI secretion-associated protein |
|---|
| Protein accession | YP_001719156 |
|---|
| Protein GI | 170022651 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03362] type VI secretion-associated protein, VC_A0119 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCA CGTCACAACA TCCCTGGCAT GTCTTGTTAC AAGCCCCTTT GTCACCTGAG
CAGACCGCAC AAGCCCTGGC CGATGATGAC CCCCAATGGG AATATATCGA CGGCCAGATG
GTGAAACTGG GGTCATTGGC CCACGCCACG CTGAATATTG ATGATATTCA GCAACAAGCC
ATGGCGCTGT TATCACAGAA AAGTAAAGAC TTCCGGCTCG TGGTGCATCT ACTGCGCACC
CTACAACACG GGGGCCAGCC AGATGAATTG ATGCTGGCGA TGTCATTGCT GACTGAATAC
GTCCAGCTAT TTTGGACTAC GGCCTGGCCG CAAAATCCTT TACACAAACG GCGCTTTGCT
CAACAAATCC TAAAACGCTT TGACAGCGCC AGCAGCAGTT TTAGCCAGCG AGCGGACGAG
GCTCAACGTG AGAATGTGCA AGGATTATTG GCACATTTAG CACAGGTTTG GCATAGCCGT
GAGCCGGGTC TGGCTAAAGA GGTGGATGCA TTACGCAGCC GCTATGCGCG GCCACCGGAG
CGGGTTATCG AGGCAGTGGC TTCTGATGAA CCGCTCTCAT CCAACACCTT GGCGGCGGCA
ATGGCCACCA CCCCCGTTAG CCCAAGCCTC GCCATAGATA ACACGAGCGA CAGAGCCTGG
CGGCAGACCT TGCTGAAAAT GGCGGATTTA CTCAGCGAAC AGCAACCCGA TGCCGCTATC
GGTTTCCGGC TACGCCGCCA TGCCGTATGG GGCGCGTTAA CCGCGCCACC TATGGCGCAG
AGCGATGGCC GCACTCCGTT GGCCGCAGTT TCTGCGGATC GAACCGCCGA TTACTTAGCA
CGTCTGGCTA ATGCCGATTT GCCTTTGTGG CACCAAGTGG AGCAGAGCCT CACCCTCGCG
CCTTATTGGC TGGATGGACA TGTGCTTTCG GCACAAATCG CCCTGCAACT GGGTTATGAC
GCGGTGGCAC AGGCTATCCG TGATGAACTC AGCGTTTTTT TAGCCCGTAT TCCCGCATTA
AAAACCCTCT TTTTTACGGA TATGACGCCA TTCCTCTCCT CTGAATCTGC CGCCTGGTTA
CAGCAGGATG CGAATCATCA GGGAAGAAGT CGCACTATTG AACAGGATGA AATTTGGCAA
TGCTATCAAC AGCAAGGATT GGAAGCCGCA CTACAGATGA TAAACCGGCA ACCACAGCAA
TCCGAACCTC GGGACCGTTT TTACCATCAA TTGCTCAGTG CACAGTTGTT CGAAAAAGCA
GGGTTAACCG CATTGGCACA GCAGCACTAC CACAGCTTAT TACTGGTGGG GCAGCAATTA
CAGCTAAGCG AATGGGAACC TGCGTTGATC GCTCTACTGA CAGAAAAACA GCGACAACTC
AAACCATGA
|
|---|
| Protein sequence | MDITSQHPWH VLLQAPLSPE QTAQALADDD PQWEYIDGQM VKLGSLAHAT LNIDDIQQQA
MALLSQKSKD FRLVVHLLRT LQHGGQPDEL MLAMSLLTEY VQLFWTTAWP QNPLHKRRFA
QQILKRFDSA SSSFSQRADE AQRENVQGLL AHLAQVWHSR EPGLAKEVDA LRSRYARPPE
RVIEAVASDE PLSSNTLAAA MATTPVSPSL AIDNTSDRAW RQTLLKMADL LSEQQPDAAI
GFRLRRHAVW GALTAPPMAQ SDGRTPLAAV SADRTADYLA RLANADLPLW HQVEQSLTLA
PYWLDGHVLS AQIALQLGYD AVAQAIRDEL SVFLARIPAL KTLFFTDMTP FLSSESAAWL
QQDANHQGRS RTIEQDEIWQ CYQQQGLEAA LQMINRQPQQ SEPRDRFYHQ LLSAQLFEKA
GLTALAQQHY HSLLLVGQQL QLSEWEPALI ALLTEKQRQL KP
|
|---|
| |