Gene YPK_0397 details

Gene Information

• Locus tag: YPK_0397
• ID: 6091016
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 432489
• End bp: 433175
• Gene Length: 687 bp
• Protein Length: 228 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 641595461
• Product: hypothetical protein
• Protein accession: YP_001719155
• Protein GI: 170022650
• TIGRFAM ID: [TIGR03360] type VI secretion-associated protein, VC_A0118 family

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACACGT GGTTATTGAT TAGCTCGTTA CTGTTTTCCG GCGGCCATAC CGACGCTTTT 
TGGACGATGG GATTAACCCC CCCGGTGGCG GAAAAAGAGG AGGCGGGGAC GCTGGCACTG 
GTGATGCGTT GCCGTAGCGA AAACTCGGCT CTGGTACGGC TGGACTGTTA TGACAAAGCG 
CTCTCGCCAG TGAACGCCGT CGATGAAAAA CGGGTAAATG CTGGCCCTGC CTGGCAGCGA 
GCGATGAATC AGGAAAAGGG ACGCACTGAT CACTCCACCG CATTTCTGGT GACGGAAGGC 
GAAGGCTCGA ATCCGATGGT GCTCATTACC ACCCCTGCGA TTGGCATGCC ACCTCCACGG 
CCGGTACTGA TGTTGAGCTG CATTGACAAT ATCACCCGCT TACAGATTGC GCTGGTGGGG 
CCACAAAAAG AGAGTTCCGT TACGTTGATT ATCGACAAAG CCGGAATTAT CGACAAAACC 
CGTCTGGACG CACAGTGGTT CCTGCGTGAA AACGGCTATT TACTGGAATC CAGCCGTGGC 
CTGGCGGGTA TCGATGAAAT TAAGCGGTTG ATGTCAGCGG AAACCCTGAC CATCGAAGGG 
GCAAACGGTG CTTTTCCTCG GCTGACATTT ACTCTTTCTC AGTTAACGCC AGCGTTGAAA 
CCGCTGCGTA ACGCATGTCA TTGGTGA 

 

Protein sequence

MNTWLLISSL LFSGGHTDAF WTMGLTPPVA EKEEAGTLAL VMRCRSENSA LVRLDCYDKA 
LSPVNAVDEK RVNAGPAWQR AMNQEKGRTD HSTAFLVTEG EGSNPMVLIT TPAIGMPPPR 
PVLMLSCIDN ITRLQIALVG PQKESSVTLI IDKAGIIDKT RLDAQWFLRE NGYLLESSRG 
LAGIDEIKRL MSAETLTIEG ANGAFPRLTF TLSQLTPALK PLRNACHW