Gene YPK_0388 details

Gene Information

• Locus tag: YPK_0388
• ID: 6088600
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 421687
• End bp: 422127
• Gene Length: 441 bp
• Protein Length: 146 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 641595452
• Product: type VI secretion system lysozyme-related protein
• Protein accession: YP_001719146
• Protein GI: 170022641
• COG category: [S] Function unknown
• COG ID: [COG3518] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03357] type VI secretion system lysozyme-related protein

Plasmid Coverage information

• Num covering plasmid clones: 43
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCGCGC TTCTTAATTG GGATCGAGGG AGTTCTGCCA GTTTGTTTGA CCGCATACAG 
GGGAAGGGCG CTAGCTCTTC CTCCGATGGC CGTCTGCGTG AGCTATTGAA TTCAATCCAA 
AAGCATTTGA ACGAGGTCCT TAACTCTCGT CCAGGTGCTT GTCAAAGTGC GGTCGATCTC 
GGGGTTATCG ACCTCAATGA TGCGACCGCC ACCTCATCTG ATTTTCGAAA AAGTATTGAG 
AAAGCCATTA AGGATTGTAT CGAGAACTAC GAACCCCGAA TTTCTGCCGT TACGGTTCAA 
TCCTTGCTGA ACCATGGCGA CCCACTGCAA CTGAGTTTCC ATATTAGCGC TCGTGTTAAT 
TTCGACGATA TGGGTGATGT CGTTGAGTTC AACATTCAGT TAGACAATAA CCGCCGTTAC 
TGCTTTAACC AGGAAACATA A 

 

Protein sequence

MAALLNWDRG SSASLFDRIQ GKGASSSSDG RLRELLNSIQ KHLNEVLNSR PGACQSAVDL 
GVIDLNDATA TSSDFRKSIE KAIKDCIENY EPRISAVTVQ SLLNHGDPLQ LSFHISARVN 
FDDMGDVVEF NIQLDNNRRY CFNQET