| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0303 |
|---|
| Symbol | secY |
|---|
| ID | 6090539 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 328537 |
|---|
| End bp | 329868 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641595363 |
|---|
| Product | preprotein translocase subunit SecY |
|---|
| Protein accession | YP_001719069 |
|---|
| Protein GI | 170022564 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0201] Preprotein translocase subunit SecY |
|---|
| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000136571 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGC AACCAGGATT AGATTTTCAA AGTGCTAAAG GCGGATTAGG CGAGCTGAAG
CGCAGACTTT TGTTTGTTAT CGGTGCGCTT ATTGTTTTCC GTATCGGCTC TTTTATTCCG
ATTCCTGGTA TCGATGCCAC TGTGCTTGCC AAATTGCTTG AGCAGCAGAG AGGCACCATC
ATTGAAATGT TTAACATGTT TTCTGGTGGT GCTCTCAGTC GTGCTTCTAT CTTTGCCTTG
GGTATCATGC CGTATATTTC GGCATCAATT ATTATCCAAC TGTTAACGGT GGTACATCCA
GCGTTAGCAG AAATAAAGAA AGAAGGGGAA GCTGGCCGTC GTAAGATTAG CCAGTACACC
CGTTATGGCA CGTTGGTATT GGCTATATTC CAATCGATCG GTATTGCTAC CGGTCTTCCG
AATATGCCTG GGATGCAAGG TCTGGTAATC AATCCAGGCT TTGCTTTCTA TTTTACCGCT
GTTGTTAGCT TAGTCACAGG GACTATGTTC CTGATGTGGC TGGGTGAACA GATTACTGAA
CGGGGTATCG GAAACGGTAT TTCAATCATA ATCTTTGCTG GTATTGTTGC GGGGCTTCCT
CCTGCAATTG CCCATACCAT CGAGCAAGCT CGGCAAGGCG ACCTGCACTT CCTCCTGTTG
CTGTTGGTTG CAGTATTAGT GTTTGCAGTA ACCTTCTTCG TTGTTTTCAT TGAACGTGGT
CAACGTCGTA TTGTCGTTAA CTATGCAAAA CGTCAACAAG GTCGTCGTGT TTATGCAGCA
CAGAGCACAC ACTTACCGTT GAAAGTGAAT ATGGCTGGGG TTATCCCTGC AATCTTCGCT
TCCAGCATAA TTCTGTTTCC TGCCACGATT GCATCATGGT TTGGGGGCGG AACAGGTTGG
AACTGGCTGA CGACTATTTC GATGTATTTG CAGCCGGGAC AGCCGCTTTA TGTGTTACTC
TATGCGTCTG CAATCATCTT CTTCTGTTTC TTCTACACGG CGTTAGTGTT CAACCCGCGT
GAAACAGCAG ATAACCTGAA GAAGTCCGGT GCATTCGTGC CAGGAATTCG TCCGGGAGAG
CAAACGGCGA AGTACATCGA TAAAGTAATG ACACGTCTAA CCTTAATTGG TGCGATGTAT
ATTACTTTCA TCTGCCTGAT CCCGGAGTTC ATGCGTGACG CGATGAAAGT ACCATTTTAC
TTTGGTGGTA CCTCCCTACT TATTGTAGTG GTGGTCATCA TGGACTTTAT GGCTCAAGTG
CAAACTCTGA TGATGTCTAG TCAGTACGAG TCTGCATTGA AGAAAGCAAA CCTGAAAGGC
TATAACCGCT AA
|
|---|
| Protein sequence | MAKQPGLDFQ SAKGGLGELK RRLLFVIGAL IVFRIGSFIP IPGIDATVLA KLLEQQRGTI
IEMFNMFSGG ALSRASIFAL GIMPYISASI IIQLLTVVHP ALAEIKKEGE AGRRKISQYT
RYGTLVLAIF QSIGIATGLP NMPGMQGLVI NPGFAFYFTA VVSLVTGTMF LMWLGEQITE
RGIGNGISII IFAGIVAGLP PAIAHTIEQA RQGDLHFLLL LLVAVLVFAV TFFVVFIERG
QRRIVVNYAK RQQGRRVYAA QSTHLPLKVN MAGVIPAIFA SSIILFPATI ASWFGGGTGW
NWLTTISMYL QPGQPLYVLL YASAIIFFCF FYTALVFNPR ETADNLKKSG AFVPGIRPGE
QTAKYIDKVM TRLTLIGAMY ITFICLIPEF MRDAMKVPFY FGGTSLLIVV VVIMDFMAQV
QTLMMSSQYE SALKKANLKG YNR
|
|---|
| |