Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_0289 |
Symbol | rpsC |
ID | 6087058 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 322738 |
End bp | 323436 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641595349 |
Product | 30S ribosomal protein S3 |
Protein accession | YP_001719055 |
Protein GI | 170022550 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0092] Ribosomal protein S3 |
TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00000655466 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGGTCAGA AAGTACATCC TAATGGTATT CGACTAGGTA TTGTCAAAGC TTGGAACTCT ACCTGGTACG CAAATACCAA AGAATTCGCT GACAACCTGG ACAGCGACTT TAAAGTTCGC CAATTCCTGA CTAAGGAATT AGCGAAAGCT TCCGTTTCTC GCATCGTTAT CGAGCGTCCA GCGAAGAGCA TCCGTGTGAC TATTCACACT GCTCGCCCTG GCATCGTTAT CGGCAAGAAA GGTGAAGATG TCGAAAAACT GCGTAAGGTC GTAGCGGATA TCGCTGGCGT TCCTGCACAG ATTAACATCG CCGAAGTCCG TAAACCGGAA CTGGATGCAA AATTGGTTGC TGACAGTATC ACTTCACAGC TGGAACGTCG TGTTATGTTC CGTCGTGCTA TGAAGCGTGC TGTACAGAAC GCAATGCGTC TTGGCGCTAA AGGTATCAAA GTTGAAGTAA GCGGCCGCCT TGGCGGTGCT GAAATCGCGC GTACCGAATG GTACCGTGAA GGTCGTGTTC CGTTGCATAC ACTGCGTGCG GATATCGATT ACAACACATC TGAAGCGCAC ACCACTTATG GTGTAATCGG CGTTAAGGTA TGGATCTTCA AAGGTGAGAT CTTGGGTGGT ATGGCTGCTG TTGAACAACC GGAACCGGCT GCTCAACCTA AAAAGCAGCA GCGTAAAGGC CGCAAGTAA
|
Protein sequence | MGQKVHPNGI RLGIVKAWNS TWYANTKEFA DNLDSDFKVR QFLTKELAKA SVSRIVIERP AKSIRVTIHT ARPGIVIGKK GEDVEKLRKV VADIAGVPAQ INIAEVRKPE LDAKLVADSI TSQLERRVMF RRAMKRAVQN AMRLGAKGIK VEVSGRLGGA EIARTEWYRE GRVPLHTLRA DIDYNTSEAH TTYGVIGVKV WIFKGEILGG MAAVEQPEPA AQPKKQQRKG RK
|
| |