Gene YPK_0283 details

Gene Information

• Locus tag: YPK_0283
• Symbol: rplC
• ID: 6089960
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 319689
• End bp: 320318
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 641595343
• Product: 50S ribosomal protein L3
• Protein accession: YP_001719049
• Protein GI: 170022544
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.00000156273
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTGGTT TAGTCGGTAA AAAAGTGGGC ATGACTCGTA TCTTCACTGA AGATGGCGTT 
TCAATCCCAG TAACTGTTAT CGAAATTGAA GCGAACCGCG TAACTCAGGT CAAAAGCCTG 
GAGAACGACG GATACCGTGC TGTGCAAGTA ACTACCGGTG CTAAAAAAGC TAACCGCGTT 
ACTAAACCAG AAGCGGGTCA TTTCGCTAAA GCTGGCGTAG AAGCTGGCCG TGGTCTGTGG 
GAATTCCGCC TTCCAGAAGG TCAAGAGTTT ACTGCTGGTC AAGAAATTAG CGTCGAAATT 
TTTGCAGACG TTAAGAAAGT CGACGTTACA GGTACGTCTA AAGGTAAAGG TTTTGCCGGT 
ACTGTTAAGC GCTGGAATTT CCGCACCCAA GATGCTACCC ACGGTAACTC CTTGTCTCAC 
CGTGTTCCGG GTTCTATCGG TCAAAACCAG ACTCCGGGCA AAGTGTTTAA AGGCAAGAAA 
ATGGCAGGCC ATATGGGTGA TGAACGTGTA ACTGTTCAGA GCCTGGATGT AGTACGTGTT 
GACGCTGAGC GCAACCTACT GCTGGTCAAG GGCGCTGTTC CGGGAGCTAC CGGTGGCAAC 
CTGATCGTAA AACCGGCTGT CAAGGCGTAA 

 

Protein sequence

MIGLVGKKVG MTRIFTEDGV SIPVTVIEIE ANRVTQVKSL ENDGYRAVQV TTGAKKANRV 
TKPEAGHFAK AGVEAGRGLW EFRLPEGQEF TAGQEISVEI FADVKKVDVT GTSKGKGFAG 
TVKRWNFRTQ DATHGNSLSH RVPGSIGQNQ TPGKVFKGKK MAGHMGDERV TVQSLDVVRV 
DAERNLLLVK GAVPGATGGN LIVKPAVKA