Gene YPK_0095 details

Gene Information

• Locus tag: YPK_0095
• ID: 6090911
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 112196
• End bp: 112900
• Gene Length: 705 bp
• Protein Length: 234 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 641595155
• Product: oligogalacturonate-specific porin
• Protein accession: YP_001718861
• Protein GI: 170022356
• TIGRFAM ID: [TIGR03304] outer membrane insertion C-terminal signal

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATATTA AATTATTGTC TCTGGCAGTG GCATCACTCA TTAGTACCAG CGCAGTGGCA 
GTCACTATTG ACTATCGTCA TGAAATGCAA GATCAAAGTG GTAACACTCA CAAAGATAGG 
TTATTAATGT CCCACCGCTT TGCTAATGGC TTTGGATTAT CTTTGGAAGG CAAGTGGAAA 
GGCGCTCAGG ATAAGGATAA ACCCTTCAAT GAAACCGTCA GTAATGGCAC TGAAGTTGTT 
GCCAGCTATG TGTATAAAAT TAATAACACA TTCTCTATTG AGCCGGGATT CTCATTAGAT 
TCAAACTCTA CGTCTAACAA TTATCGCCCT TATCTGCGTG GCAAGGCAGT TATCGTTGAT 
GATCTCTCCG TTTCATTGCG TTATCGCCCT TATTATAAAC GTACCAGTGC GAATATTAAT 
ACGCCAAAAG ACACCTCTGA AAATGGCTAT AACCTGACGA GTGTCATTAG TTATAAAATT 
GCTAAAGATT ATCAATTAGA TTATGAAATC GATTACAAGC AGGCAAATAA AGCCGGTGTT 
GTGTTAGCTG ATAAAGAAAA CTACGATTGG AGCCACGATC TTAAATTAAC GTACAAGTGG 
GATAAGAATT GGTCTCCTTA TATGGCACTC GGTAATGTTT CTGGTAGCAA AAATACCGAT 
GAGCGCCAAA CACGTTATCG CGTAGGGGTA AAATATAGCT TCTAA 

 

Protein sequence

MNIKLLSLAV ASLISTSAVA VTIDYRHEMQ DQSGNTHKDR LLMSHRFANG FGLSLEGKWK 
GAQDKDKPFN ETVSNGTEVV ASYVYKINNT FSIEPGFSLD SNSTSNNYRP YLRGKAVIVD 
DLSVSLRYRP YYKRTSANIN TPKDTSENGY NLTSVISYKI AKDYQLDYEI DYKQANKAGV 
VLADKENYDW SHDLKLTYKW DKNWSPYMAL GNVSGSKNTD ERQTRYRVGV KYSF