| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0094 |
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| Symbol | |
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| ID | 6090057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 109369 |
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| End bp | 111555 |
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| Gene Length | 2187 bp |
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| Protein Length | 728 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641595154 |
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| Product | biofilm formation regulator HmsP |
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| Protein accession | YP_001718860 |
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| Protein GI | 229597224 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGTTCC TAATAGGAAA AGACCGAAAC CCACATTATT CTTGCCTTCC ATTAGAGTAT
CGCAAGATAA AATCGGCAAG CGATCGAGTA TACTCAGACA GAATCGACGA GTGGTTAGAG
GATAGTAACA ACCACCTTAT TTTATGCAGT CGGAATTGGC GGAGAACGAG TTTGCGGGTA
AGGCGCTCAT TAACGATTAA ACAAATGGCA GCGGTGGCAG TAGTTGCACT GGTGACTATC
TGTATTTTTA TCATCCTTCA GTTGTTCCAC TTTGTGCAAC AGCGTAAAGA TGATTATGCC
AACCAGTTGG AAAGTATTGC TTATTCGGTT CGCCAACCCC TGTCTGAGGC CATACTCAGC
GTTGATATTC CACAAGCTAA AAAAATCCTC AACAGCCTAT TACCTATTGG TATTCTTAGC
CGTGCTGAAG TGATATTACC GAACCAAATA CAGGTATTGC ACGCAAATTT TCCAACAGAG
CGGCCCATTC CACACTGGGC CAAGCGGGTT TTCTCCTTGC CCGTACAGAT AACCGTGCCT
TTATATGCGT TGGAACGGGT ACCCGCAAAC CCTCAGCCCT TAGCGCATTT AGTCCTGCGT
GCTGACTCTT TCCGTATGTA TCAATTTATT CTCAGCGCTC TGTCAGCCAT GCTCTCAACA
TATTTGTTAC TGGCATTGGT GTTATCGGTA TCTATCGCTT GGTGTATTAA TCGCCTGATT
ATTCACCCGC TGCGGGCAAT GGCCAAAGAG CTGGAGGATA TTGGTGACCA CGGGGTGCTG
CATCATCAAC TGACGCTACC GGCGCATCAT CAGGATGATG AACTGGGTGT GTTGGTGCGT
AATTACAACC GCAATCAGCA ACTGTTAGCG GATGCCTATG CTGATATGGG CCGGATTAGT
CACCGTTTCC CGGTGACTGA ATTGCCCAAT CGGTCATTAT TTATCAGCCT GCTGGAGAAA
GAAATTGCCT CCAGTACGCG TACAGATCAC TTTCATCTGT TGGTGATTGG TATTGAAACC
CTGCAAGAGG TTTCTGGCGC CATGAGTGAA GCCCAGCACC AACAGTTATT GTTGACGATA
GTACAGCGGA TCGAGCAGTG CATTGATGAC AGCGACCTGT TAGCGCAACT GAGTAAAACT
GAATTTGCCG TGTTAGCCAG AGGTACCCGC CGCTCATTCC CAGCCATGCA ATTGGCTCGG
CGGATTATGT CGCAAGTGAC CCAACCGCTG TTTTTCGACG AGATAACATT GCGCCCCAGT
GCCAGTATTG GTATCACCCG CTATCAGGCT CAACAGGACA CTGCCGAATC CATGATGCGC
AATGCCAGTA CAGCAATGAT GGCGGCTCAT CATGAGGGGC GTAATCAGAT AATGGTATTT
GAGCCTCATT TGATTGAAAA AACGCACAAG CGGCTGACGC AGGAAAATGA CCTCTTACAG
GCGATTGAAA ACCACGATTT CACGTTATTC TTACAACCTC AATGGGATAT GAAGCGCCAG
CAGGTTATCG GTGCGGAGGC GCTACTGCGT TGGTGCCAAC CAGATGGCAG CTACGTTTTA
CCGTCAGGCT TTGTTCACTT CGCCGAAGAG GAGGGGATGA TGGTGCCACT GGGGAACTGG
GTGCTAGAAG AAGCCTGCCG TATTCTGGCT GATTGGAAAG CACGCGGTGT TAGCCTGCCG
TTATCGGTGA ATATATCGGG CTTACAGGTA CAAAATAAAC AGTTCTTGCC GCATTTGAAA
ACGCTCATTA GCCACTATCA TATTGATCCA CAACAATTGT TACTGGAAAT CACCGAAACT
GCCCAAATTC AGGATCTCGA TGAAGCATTG AGGCTACTGC GTGAGTTACA GGGGCTGGGG
TTATTGATCG CGTTAGATGA TTTTGGTATT GGCTACTCAA GCTTACGGTA TCTTAACCAC
CTGAAAAGCT TGCCTATCCA TATGATTAAG TTGGATAAGA GCTTTGTGAA AAATTTGCCA
GAGGATGACG CGATAGCGCG CATTATTAGC TGTGTTTCTG ATGTACTAAA GGTACGTGTG
ATGGCCGAAG GGGTCGAAAC AGAAGAGCAG CGCCAATGGT TGCTAGAGCA TGGCATTCAA
TGCGGCCAAG GCTTCCTTTT CTCTCCGCCA CTGCCACGTG CAGAATTTGA AGCCCAGTAT
TTCAGCAGCG CTCACCACGT AAGTTAA
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| Protein sequence | MAFLIGKDRN PHYSCLPLEY RKIKSASDRV YSDRIDEWLE DSNNHLILCS RNWRRTSLRV
RRSLTIKQMA AVAVVALVTI CIFIILQLFH FVQQRKDDYA NQLESIAYSV RQPLSEAILS
VDIPQAKKIL NSLLPIGILS RAEVILPNQI QVLHANFPTE RPIPHWAKRV FSLPVQITVP
LYALERVPAN PQPLAHLVLR ADSFRMYQFI LSALSAMLST YLLLALVLSV SIAWCINRLI
IHPLRAMAKE LEDIGDHGVL HHQLTLPAHH QDDELGVLVR NYNRNQQLLA DAYADMGRIS
HRFPVTELPN RSLFISLLEK EIASSTRTDH FHLLVIGIET LQEVSGAMSE AQHQQLLLTI
VQRIEQCIDD SDLLAQLSKT EFAVLARGTR RSFPAMQLAR RIMSQVTQPL FFDEITLRPS
ASIGITRYQA QQDTAESMMR NASTAMMAAH HEGRNQIMVF EPHLIEKTHK RLTQENDLLQ
AIENHDFTLF LQPQWDMKRQ QVIGAEALLR WCQPDGSYVL PSGFVHFAEE EGMMVPLGNW
VLEEACRILA DWKARGVSLP LSVNISGLQV QNKQFLPHLK TLISHYHIDP QQLLLEITET
AQIQDLDEAL RLLRELQGLG LLIALDDFGI GYSSLRYLNH LKSLPIHMIK LDKSFVKNLP
EDDAIARIIS CVSDVLKVRV MAEGVETEEQ RQWLLEHGIQ CGQGFLFSPP LPRAEFEAQY
FSSAHHVS
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