| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0051 |
|---|
| Symbol | |
|---|
| ID | 6090861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 55655 |
|---|
| End bp | 56212 |
|---|
| Gene Length | 558 bp |
|---|
| Protein Length | 185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641595110 |
|---|
| Product | fimbrial protein |
|---|
| Protein accession | YP_001718818 |
|---|
| Protein GI | 170022313 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAACG TTAAGAAAAG CACTTTTATT ATTGCTTTAG CAACTTTATC TGTTATTTAT
CAGGCTTTAG CTGCTGATGC AGGGAATGGG CGTATTAAGT TCACTGGAAC GGTTATTAAT
GCACCGTGCT CAATTGCATT AGATTCTACT GATATTAATG TAGACCTAGG GCAGGTCGCG
AATAGGGTTC TGGAGACGGG TAACAAATAC TCTCAGAGCG TACGGTATAA CATTAATCTG
CAAGATTGTA GCCTGACGGC TCAAGGGAGT GGGGGGGCCA CTTATCCTGC ACTGTCTAAA
GTCAATGTCA CTTTCAGCGG TATTGCTGAT GCGGCGGCTC CAGCCCTGCT GGCTAACACC
GGTAGCGCGA AAGGCGTGGG TGTTCGCCTT ATTGGCACTG ATGACGCGCT ACTCAAAGTG
GGTGATACGA GTCCTGATAT TAATCTGACA TCTGGTCCGA ATCAGATTGT ATTTGCTGCT
CGTATTGAAG CCACCAGTGC GCCAGTAACT ACCGGTACTG TTGTCTCTCA GGCAACCTAT
GCTCTGAATT ATAAATAA
|
|---|
| Protein sequence | MSNVKKSTFI IALATLSVIY QALAADAGNG RIKFTGTVIN APCSIALDST DINVDLGQVA
NRVLETGNKY SQSVRYNINL QDCSLTAQGS GGATYPALSK VNVTFSGIAD AAAPALLANT
GSAKGVGVRL IGTDDALLKV GDTSPDINLT SGPNQIVFAA RIEATSAPVT TGTVVSQATY
ALNYK
|
|---|
| |