| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_1923 |
|---|
| Symbol | |
|---|
| ID | 6025427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 2024845 |
|---|
| End bp | 2026464 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641594742 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_001718048 |
|---|
| Protein GI | 169832066 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[COG3411] Ferredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCCCCGC CCACCCAGGT CCTGGTCTGC ACCAGCACCG CCTGCCGGTC GTCCGGCGGC
GAACAGCTTT TCAAGGCGCT GCGGCGGGAA ATCAAGAACC TCGGCCTGGA CGTGCGGGTG
GTCAAAACCG GGTGCTACGG CTTTTGCGGC CTCGGATCGG TGGCTGTCGT CCATCCGGGC
GCGGTGCTCT ACTGCAATAT TGACGAGAAC GGGGCGGGCA ACATCGCCCG CACCCACCTG
CGCGACGGGC GGCTGGTACA AAACCTGCTC TACCGGTCGA TGAACGGCGA GGGCAACCGG
AACTTTCTGC ACGAGATTCC CTTTTTCGAG AAACAGCAAC GGGTAGTGCT GGACAACTCC
GGGCTGATCG ACCCGGAGGA CATAAACGAA TACATCGCCC GGGACGGCTA TTTCGCGCTG
GCCGAAGTGC TCCGCTCACG AGCCGGTCCG GCGGACGTGG TGGACGCGGT GCGGCGGTCT
GGCCTGCGCG GCCGGGGCGG GGCCGGCTTC CCGACCGGGG AAAAGTGGTT TTTCGCCGCG
GCCCAGGAAG GCCCGGAGAA ATACATCATC TGCAACGCCG ACGAGGGCGA CCCCGGGGCC
TTTATGGACC GGAGCATCCT GGAGGGGAAC CCGCACGCCG TGCTCGAGGG CATGCTGATT
GCGGGCTACG CCGTCGGGGC GCAAGAGGGC TACGTGTACG TCCGGGCCGA ATATCCTCTG
GCGGTGAAGC GCCTGGAAAT CGCCATCCGC CAGGCGCAGA AACTGGGCCT CCTGGGGAAG
GGCATTCTGG GCTCCGATTT CGACTTCGAC GTCGACATCG CCCTAGGGGC GGGGGCCTTC
GTGTGCGGCG AGGAGACGGC ACTATTGCGT TCGGCCATGG GTTTTAGGGG CGAGCCGCGG
GTCCGCCCTC CCTATCCGGT GGAAAAGGGA CTTTACGACA AGCCGACCAT CATCAACAAT
GTCGAGACCC TCGCCAATGT TCCGGCGATC ATCCGGAACG GCCCGGAGTG GTTTGCCGCT
ATGGGCACCG AAGGCAGCAA GGGCACCAAG ATTTTCTCGC TGGCCGGACA GATCAAGAAC
ACCGGGCTGA TCGAAGTGCC CATGGGCATC AGCCTGGCCG ACATCGTTTA TGACATCGGG
GCTGGGCCCC CGCCCGGGCG CCGGATCAAG GCCGTGCAGA CCGGGGGACC TTCCGGGGGC
GCGGTGCCCG CCGAACTCTT AGACGTGCCG GTCGACTACG AATCGCTCCA GGCCGTCGGG
ACCATTATGG GTTCCGGGGG GCTGATCGTC CTGGATAACA CCGACTGCAT GGTGGACCTG
GCCAAGTTCT ACATGCAGTT CGCGGCCCAC GAGTCCTGCG GCGCCTGCAC ACTCTGCCGG
GTCGGCGTGG TGCACGTCGT GGACATTCTG GAGCGGATCA CTCAGGGCGA AGGGACTCTG
GACGACCTGC AGGAACTCGA GGAGTTGGCG TACGACGTCC GGGACGCCTC CCTGTGCGGG
CTGGGCCAGA CGGCGGCTAA CCCCGTGCTG TCCACCATGA AGTATTTCTG GGACGAATAC
CTGGCCCACG TCCGGGACCG CCGTTGTCCG GCCGGCGTGT GTAACGCGCT TTCCCACTGA
|
|---|
| Protein sequence | MAPPTQVLVC TSTACRSSGG EQLFKALRRE IKNLGLDVRV VKTGCYGFCG LGSVAVVHPG
AVLYCNIDEN GAGNIARTHL RDGRLVQNLL YRSMNGEGNR NFLHEIPFFE KQQRVVLDNS
GLIDPEDINE YIARDGYFAL AEVLRSRAGP ADVVDAVRRS GLRGRGGAGF PTGEKWFFAA
AQEGPEKYII CNADEGDPGA FMDRSILEGN PHAVLEGMLI AGYAVGAQEG YVYVRAEYPL
AVKRLEIAIR QAQKLGLLGK GILGSDFDFD VDIALGAGAF VCGEETALLR SAMGFRGEPR
VRPPYPVEKG LYDKPTIINN VETLANVPAI IRNGPEWFAA MGTEGSKGTK IFSLAGQIKN
TGLIEVPMGI SLADIVYDIG AGPPPGRRIK AVQTGGPSGG AVPAELLDVP VDYESLQAVG
TIMGSGGLIV LDNTDCMVDL AKFYMQFAAH ESCGACTLCR VGVVHVVDIL ERITQGEGTL
DDLQELEELA YDVRDASLCG LGQTAANPVL STMKYFWDEY LAHVRDRRCP AGVCNALSH
|
|---|
| |