| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_1591 |
|---|
| Symbol | |
|---|
| ID | 6026305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 1679891 |
|---|
| End bp | 1681249 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641594414 |
|---|
| Product | sun protein |
|---|
| Protein accession | YP_001717725 |
|---|
| Protein GI | 169831743 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase
[TIGR00563] ribosomal RNA small subunit methyltransferase RsmB
[TIGR01951] transcription antitermination factor NusB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGAAG TATCGGCAAG AGAGATCGCG TTGCACGTTC TGAAGGCGGT GGAGGCCGAC
GGCGCCTACG CCAACCTCGC CCTTAACCGG GCCCTGGAGG AATTCCGCCC GTCCAAGCTG
GACCGGGCCT TTGCCACCGA GTTAGCCTAT GGGACGCTGC GCACCTTAAA CACCCTGGAT
TGGATAGTGT CACGCTATCT GCAGCAACCC TTGGGAGACC AGACGGTCTG GAGCCGCAAC
ATCCTGCGTC TAGGGGCTTA CCAGCTTTTC TACATGGACA AAGTTCCGGC TGGGGCTGCA
TGCTTCGAGG CCGTAGAACT GGCCAAGAAA TACGGCACCC CGGGGACGGC CCGTTTTGTG
AACGGGGTGC TGCGCAACGT GGCCCGCCAC AAGGACGAAC TCCAGTTTCC GGATCCGGAA
ACCGACCTTG TCACCCATAT CAGCCTGAAG TACTTTCACC CCACCTGGCT GGTGAAACGC
TGGCTGACCG AGTTGGGTCC GGAAGAAACC ATCGCCCTGT GCCAGGCCAA CAATACCATT
CCCCCGAACA CCATCCGCGT TAACACCCTG CGCGTGGACC GGGATTCCCT GGCGGTCCGG
CTGGAACAAG AAGGACTAAC CGTGCGGAAG ACGCGCTTTG CGCCGGAAGG ACTGGAGATC
GGCGGTTTTG TGTCCATGCG CGCGCTGCCG TCTTTTCAAC AGGGACTGTT TCAGATTCAG
GACGAGAGTT CCATGCTGGT CGCCCACGCC GTAAACCCGG CACGGGGTGT CCGGATACTG
GATGCCTGCA GCGCACCGGG GGGGAAAACC ACCCACCTGG CCCAACTGAT GGAAAATGAG
GGTATTATCA AGGCCCTGGA CATTCACCAG CACAAGCTGA AACTGGTGAG CGACAACTGC
CGCCGGCTGG GCATCGACAA CGTGGAGACA GAGCTTCTGG ATGCCCGGGA TCTTCCGGGT
GAGTTTGAGG GCTGGGCCGA CTTCGTGCTG GTCGATGCTC CGTGTTCCGG CTTGGGTGTG
CTCCGCCGGA GACCCGACGC CCGGTGGCGC AAGGAACCGG GCCAGATTAC CGGTCTGGTC
CGGTTGCAGG AAGCGATCTT GGCCGGGGCC GCCCAGTGTG TCCGGGCAGG GGGGGTGCTT
GTCTACAGCA CCTGCACGAT CACCTACGAA GAGAACCTTG GCCAGGTGCA AAGCTTTCTG
GCGCACCACC CTGACTTTTT GCTGGAGAAC TTACGGCCGT TTTTGCCGGC CGGATTGGGA
GAGGAGCAGA TGGCGCGGGG TTACCTGGAG ATTTTCCCGC ACACGCACGA AGGGATGGAC
GGGTTTTTCA TCGCGCGGAT GCGGCGGAGG CATCTGTAG
|
|---|
| Protein sequence | MAEVSAREIA LHVLKAVEAD GAYANLALNR ALEEFRPSKL DRAFATELAY GTLRTLNTLD
WIVSRYLQQP LGDQTVWSRN ILRLGAYQLF YMDKVPAGAA CFEAVELAKK YGTPGTARFV
NGVLRNVARH KDELQFPDPE TDLVTHISLK YFHPTWLVKR WLTELGPEET IALCQANNTI
PPNTIRVNTL RVDRDSLAVR LEQEGLTVRK TRFAPEGLEI GGFVSMRALP SFQQGLFQIQ
DESSMLVAHA VNPARGVRIL DACSAPGGKT THLAQLMENE GIIKALDIHQ HKLKLVSDNC
RRLGIDNVET ELLDARDLPG EFEGWADFVL VDAPCSGLGV LRRRPDARWR KEPGQITGLV
RLQEAILAGA AQCVRAGGVL VYSTCTITYE ENLGQVQSFL AHHPDFLLEN LRPFLPAGLG
EEQMARGYLE IFPHTHEGMD GFFIARMRRR HL
|
|---|
| |