| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_1398 |
|---|
| Symbol | |
|---|
| ID | 6026365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 1482185 |
|---|
| End bp | 1483315 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641594219 |
|---|
| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
|---|
| Protein accession | YP_001717539 |
|---|
| Protein GI | 169831557 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAT TGGCAAGGAC GAGTCTGACC TTGCTAATCG TAGTATTTGC CTTACTAGGG
CCGCAGTCAG CTTCTGCAGA ACCATCAGCA GATTCAACCA TGAAGCCGCC AAGAGTCACC
GCCGACGCCG CCGTCCTGGT CGACGTTGAG ACCGGGCACG TGCTTTTCGC AAAAAACGAA
AGACAGCGGA AGGACCCCGC GAGCCTGACC AAGGTGATGA CCGCTATTGT CGCGCTGGAA
GCGGGTCGGC CCGGGGACGT GGTTACCGTG AGCGAAAGGG CGGCCCGGTT CGGGCGGGGG
AGCGTCATCG ACCTCCGGGC CGGGGAGAAA ATCACCCTGG AGAACTTGTT GAAGGCGGCC
CTGATAATGT CGGCCAACGA CAGCACCATC GCCATTGCCG AGCATGTCGC CGGGGACTAC
GACCTTTTTG TCCGGTGGAT GAACCTGAAA GCGCGGCAGT TGGGAGCCCA CGACACCCGG
TTTATGAATA CCCACGGCTT CACCCACCCG AACCACTATT CCACGGCCGC AGACCTGGCT
GAGATCACCC GGTACGCCTT GCGCATTCCG CAGTTTGCCG CCCTGGTCCG GACCAGGGAA
ATCACCGTCT ACTGGCGCGA CTCAGACCGG AAGCGGACCA TCCGGAACAC CAACCGGCTG
CTCCGCTCGG ATTTTGAGGG GATCGACGGG GTGAAAACTG GCACGACATC GGCCGCCGGC
CACTGCCTGA TCGCCTCGGC CACCAGGGAC GGCCGCCGGG TTCTGGCCGT GGTGCTGCAC
AGCGACGGCC GGTACCTGGA CGCCCGCCGG CTGCTGACCT ACGGTTTTGC GCTCGAACCG
GTCGAGGTGG CCACCCGGGG AGACCAGATC ACCCGGTTGT TGGTCCGCGA GGGTGTCCGG
CCCGACGTGA TCGTGGTGCC GGCTGAGACC GTGAGGCTTT ACATTCCCGA GGCACAACTC
CCCGCGCTGG AGAAAGAAGT CCGGTTGAAA AAGACACTCG AGGCCCCGAT CGCCCCCGGT
GAAAAGCTGG GCGAAATGGC CTTCCGGATC AACGGGCGCC TGCTGGGACA GGTCGACCTC
ACGGCCGGTT ACAGGGTGGC CCGCAAGCCC TGGTACACGC GCCTCCGGTG A
|
|---|
| Protein sequence | MKLLARTSLT LLIVVFALLG PQSASAEPSA DSTMKPPRVT ADAAVLVDVE TGHVLFAKNE
RQRKDPASLT KVMTAIVALE AGRPGDVVTV SERAARFGRG SVIDLRAGEK ITLENLLKAA
LIMSANDSTI AIAEHVAGDY DLFVRWMNLK ARQLGAHDTR FMNTHGFTHP NHYSTAADLA
EITRYALRIP QFAALVRTRE ITVYWRDSDR KRTIRNTNRL LRSDFEGIDG VKTGTTSAAG
HCLIASATRD GRRVLAVVLH SDGRYLDARR LLTYGFALEP VEVATRGDQI TRLLVREGVR
PDVIVVPAET VRLYIPEAQL PALEKEVRLK KTLEAPIAPG EKLGEMAFRI NGRLLGQVDL
TAGYRVARKP WYTRLR
|
|---|
| |