Gene Daud_1218 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_1218 
Symbol 
ID6027199 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand- 
Start bp1278323 
End bp1279399 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content56% 
IMG OID641594033 
Productperiplasmic binding protein 
Protein accessionYP_001717361 
Protein GI169831379 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.0017043 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGAGGT ACTGGATGGT TTTGTGGGCG GTGGTATTGG CAGCGGTGCT CTTGGCAGCC 
GGGGTTTTGC CTGCAGTGGC TGCGCAGCAG AAGAGAATTA CGGTTACGGA GTATTTTGTC 
ACCCCCCAAG GTGAGATAGA AAAGCGCGCG GTCCGGGTGC CCTGCCCGCC CAACCGGGTG 
GTGGTTCTGG GTGCTTATCC GGCGGAGATG TTAAAGGCTC TCGGGGTAGA AAAAGCGGTG 
ATTGCGGTTG ATGAACACAC TAAGAATAAA ACGCAGTGGC CAGAATACGT CTTGAAAGTT 
CCAGATGTGG GAAGATCTTT TACCCCCAGC GTGGAAAAGA TTATCGCGCT CAAACCGGAC 
CTGGTCATCG AAGGTTTTAT GAGGCCCGAA CTCAGGAGTC AACTTACACG TGCCGGGATT 
CCGGTGCTTA AGATTTACGG CTTTAGGACT GAGCTTATCC CCACGGAAAT CCGTACCCTG 
GGCCTGATTT TCGATTGCCG GGCACGAGCC AACAGCTATG CGGCCTATAT CGAAAAACAA 
TGGAACACGG TAAAGGAGCG AACCAAAAAC CTCACTTCCC GGCAAAAGCC TAAGGTCTAC 
TGGGAGTCCA GTTTGGGTGA CTGGAGAACG TTCGGTCCCG GTTCAGGGGC CCACCCGCTC 
ATCGTCTGGG CTGGAGGAAT CAACATCGCC GCCGAGCAGA GGCTTTCTTA CCCGACAGTC 
ACGCCGGAAT GGGTAGCAGC GAAGAACCCG GACGTCATTA TCAAGTACCT CAAACGGGAA 
CAAGCTGGTT GGACGATAGA GGGAACAAAA GAAGACATGC AGAGGCTGGA GGAGCTCCGG 
CGGCAGATTA TGACTCGGCC GGCGCTGAGG CATACCAACG CTGTAAAGCA TGGCCGGGTC 
TACCTGATTT CGGATCTCAT TTCCTGTGCG CCCCGCGGGG CGGCGGGCGA GTACTACATT 
GCCAAGTGGC TGCACCCGGA GCTCTTCCGG GACGTAAACC CGGAGGCGGT GCACCGGGAG 
ATGCTCAAGA AGTTTTACGG AGAGGAGCTT AGAGGCGTAT GGGTTACCCG CCGCTGA
 
Protein sequence
MRRYWMVLWA VVLAAVLLAA GVLPAVAAQQ KRITVTEYFV TPQGEIEKRA VRVPCPPNRV 
VVLGAYPAEM LKALGVEKAV IAVDEHTKNK TQWPEYVLKV PDVGRSFTPS VEKIIALKPD 
LVIEGFMRPE LRSQLTRAGI PVLKIYGFRT ELIPTEIRTL GLIFDCRARA NSYAAYIEKQ 
WNTVKERTKN LTSRQKPKVY WESSLGDWRT FGPGSGAHPL IVWAGGINIA AEQRLSYPTV 
TPEWVAAKNP DVIIKYLKRE QAGWTIEGTK EDMQRLEELR RQIMTRPALR HTNAVKHGRV 
YLISDLISCA PRGAAGEYYI AKWLHPELFR DVNPEAVHRE MLKKFYGEEL RGVWVTRR