| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_1178 |
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| Symbol | |
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| ID | 6026359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Desulforudis audaxviator MP104C |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010424 |
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| Strand | - |
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| Start bp | 1232605 |
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| End bp | 1234638 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641593993 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein |
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| Protein accession | YP_001717321 |
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| Protein GI | 169831339 |
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| COG category | [I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1
[COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
[TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.426785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGTGA GATTGGCCAC AAAGGCGGGT TTTTGTTTCG GGGTGCACCG GGCCATTGAT
CTGGCGCTGA AGACGGTCCG CGAAACAGCC CCTCCCATCT ACAGCCTGGG ACCCTTGATT
CATAACCCCC AGGTGGTGGC CTATCTCGCC GAGCAAGGAA TCGAGGTTGT CGAGGAGATT
GAACGGGTGC CGCGCGGAAC ATTGATTATT CGTTCCCACG GCGTGGAGCC CAAGCTGTTG
GAGAAGACCC GGGAGTTGGG ATTCACGGTG GTGGACGCGA CCTGCCCCTT CGTGAAGCGT
GCGCAACGGC TGGCCTGTGA TTTGAACGAC TCCGGACACC AGGTGATCGT GGTTGGTGAC
CGGAAGCACC CGGAGGTAAG GGGGATTGTG GGCTGGACGA ACGGCCAGGC CGTAGTGGTG
GAAGACCGGG TGGAAGCGAG TGCTCTGCCC TTCTATCCGC GGGTCGGGGT GGTGGCCCAG
ACTACGCAGC CGCACGCGAA CCTGGAGGCG GTGGTGGAGG AGCTGAAGTC CAGGATGGGG
GAGGTATTGG TGTGCGACAC CATCTGCAAC GCGGTGGTGG AGCGCCAGAA CGCCGCCCTC
ACGCTGGCCC GGCAGGTGGA CGTGATGGTG GTTGTCGGGG GCATCGACAG TGCCAACACC
CGCAAGCTTA CTGGTCTGTG CCGCCTGAGC GGCACTCCGA CCTACCACAT CGAAACCGGA
GACCAGTTGC AGTCGGAATG GTTCCGGGGT TGCACGGTCG CCGGCCTGAC GGCGGGAGCG
TCAACACCTG ATTGGATTAT TGAGGAGGTT AAGAGGCGAA TGGAAGAATT GTCGGAGAAG
GAAGAGGTTG TCGGTCCAGA GGAAGAGGTG AACCCGGAAC AAGAGGTCGC GAACCCGGAG
GAAGAGGTTG TGAGCCCGGA GGAAGAATTG CAGACCACAC CGGTGAGGTC CCTCAGGAGC
GGGGATATCG TCAGGGGCGT GATTGTTCAG GTCGGTCAGG ACGAGGTTCT GGTGGATGTC
GGGGCGAAGT CGGAGGGTGT TGTGCCGTTA CGTGAGCTGT CTTGCTATGA TGTTAGCTCC
CCCGACGAGG TAGTTCAGGT GGGAGACGAG ATAGATGTTT GGGTAGTCAA GGCCGAGGAC
AACGAGGGCC GGATCATCCT TTCCAAAGGC AGGGCCGACG CGGTCAAGGC CTGGGATACG
TTGGACAAGG CCTTTCACGG CGGGGAAACC GTCAGGGGTG TCGTCCGTGA AGTGGTTAAA
GGCGGACTGC TTGTGGACCT GGGTGTGCGT TCGTTCTTAC CGGCGTCACA GGTGGAGAGA
GGCTACGTGG AGGACTTGAG CCAATATGTG GGCCGGGAAA TATCCGCCCG GATTATCGAG
CTCAACAAGG CCCGTAAGAA AGTGATCCTA TCCCGGAAAG TACTGCTGGA GGAAGAGTAC
TCACGGAAAC GGAAGGAAAC GTTGGAAACC ACCCAGGAGG GCGATGTCGT GAAGGGGGTT
GTCCGGCGGC TGACCCAGTT TGGTGCCTTT GTGGACATCG GCGGCCTAGA CGGTTTGCTG
CACATTTCCG AGATTTCCTG GCACCGCATT AACCACCCGT CCGAAGTGCT CAAGGTGGGG
GACGAACTGG AAGTCCAGGT GCTGCGGATC GACCGGGAGA ATGAGAAAGT GTCGCTGAGC
TTGAAACAAG TGCTGCCTAA TCCCTGGGAG CAGGTCGTGG AGAACTACCC CGTCGGGAGC
GTGGTCAGCG CCCGGGTGGT CCGACTGGTG CCGTTCGGGG CTTTCGTTGA ATTGGAACCC
GGGGTTGAGG GCCTGGTGCA CATCTCCCAC CTGGCCGACT GGCACGTGGC CAAGCCGGAG
GATGTCATTG CGGAGGGCCA GCAGATAAAT GTGAAGGTGC TGAGCGTGGA CGACGAGAAC
AAGCGGATCC GGCTCTCCTT GCGGGAAGTG GTCAAGGACA AGGATTATCA CAACGACCAG
GGGAGCGAGG TAACCATCGG AGACGTTTTC GGGGACCTGC TCCATAAGAA TTAG
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| Protein sequence | MEVRLATKAG FCFGVHRAID LALKTVRETA PPIYSLGPLI HNPQVVAYLA EQGIEVVEEI
ERVPRGTLII RSHGVEPKLL EKTRELGFTV VDATCPFVKR AQRLACDLND SGHQVIVVGD
RKHPEVRGIV GWTNGQAVVV EDRVEASALP FYPRVGVVAQ TTQPHANLEA VVEELKSRMG
EVLVCDTICN AVVERQNAAL TLARQVDVMV VVGGIDSANT RKLTGLCRLS GTPTYHIETG
DQLQSEWFRG CTVAGLTAGA STPDWIIEEV KRRMEELSEK EEVVGPEEEV NPEQEVANPE
EEVVSPEEEL QTTPVRSLRS GDIVRGVIVQ VGQDEVLVDV GAKSEGVVPL RELSCYDVSS
PDEVVQVGDE IDVWVVKAED NEGRIILSKG RADAVKAWDT LDKAFHGGET VRGVVREVVK
GGLLVDLGVR SFLPASQVER GYVEDLSQYV GREISARIIE LNKARKKVIL SRKVLLEEEY
SRKRKETLET TQEGDVVKGV VRRLTQFGAF VDIGGLDGLL HISEISWHRI NHPSEVLKVG
DELEVQVLRI DRENEKVSLS LKQVLPNPWE QVVENYPVGS VVSARVVRLV PFGAFVELEP
GVEGLVHISH LADWHVAKPE DVIAEGQQIN VKVLSVDDEN KRIRLSLREV VKDKDYHNDQ
GSEVTIGDVF GDLLHKN
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