Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daud_1047 |
Symbol | |
ID | 6027221 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Desulforudis audaxviator MP104C |
Kingdom | Bacteria |
Replicon accession | NC_010424 |
Strand | + |
Start bp | 1101148 |
End bp | 1103139 |
Gene Length | 1992 bp |
Protein Length | 663 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641593859 |
Product | glycoside hydrolase 15-related |
Protein accession | YP_001717191 |
Protein GI | 169831209 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
TIGRFAM ID | [TIGR01577] oligosaccharide amylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.425062 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGCCGCGCG ACATTGTTCT GGGCAACGGC TCGATGTTGG TCAACCTTGA CCGGAACCTG AGTCTCAGGG ATTTATACTA CCCGTTTGTG GGCATGGAAA ACCATATTGC GGGCGGTAGA TGTTTGCTGG GCGTCTGGGT TGACGGGCAG TTCAGCTGGG TTCAGAACCC GCAGTGGCAG AAAGAGGCCG GGTATGTGCC CGGCACCCTG ATATCACTGG TGCGGGCTGT ACACAGCGGT CTCGGCCTGG AGGTGACTGT GGAAGACGCG GTGCACTACC GGCAAAACCT CTTTCTGCGC CGTATTCACG TCCGGAACCG GTGGCGGGAC CGCCGCGAAC TGCGGCTTTT CTTTGTAAAC GATTTCCACG TCGGGGGCTG GGATATCGGA GACACCGCCC TGTATGACCC CATTTCCCGG GCGGTGTGCC ATTACAAGCG GGACTACTAT TTCTACGTGA GCGGCAACTG TCAGGGACAG CCCATCTACC AGTACCATGT CCAGAAACGG TTCGGCGGCC GCGAAGGCAG TGCGCGAGAC GCCGAAGACG GCGTGTTGAG CGGCAACCCC ATTGACCAGG GCTCGGTGGA CAGCACCATC AGTTTCCGGG CGGCGCTGGA ACCGGAGGGC GAAGTCCAAG CGGACCTTTG GATCGCGGCA GGCCGGAGCC TGGACGAGGT ACGCAACCTG CACGCCTGGG TGGCGGACAA CGAGGCGGAC CGGTTGATGA ACGAGACCGC CAGCTTCTGG CGGCACTGGT TGGCGCTCGC GGAGCGCGAC TGGGCTGATT TGCCGGCGGA AGTGGTGGCG CTTTTCAAGA CCAGCCTGCT GGTGACGCGC ACCCAGATCG ACAACAACGG AGCTGTTCTG GCCGCGAACG ATACCGACAT CCTGAGCACC AACCGGGATC ACTATTCGTA CGTGTGGCCG CGTGATGGCG CCCTGGTGGC GCGTATGCTG GACGGCGCCG GCTACCACGA AATTACGGCG GCCTTCTATC GTTTTTGCGC CCGGACCATC AGTCGCGAAG GCTACTTCTA CCACAAATAC AACCCGGACG GAACGGTGGG CTCAAGCTGG CATCCCTGGA CGGCCGAGGT GGAGGAAGGG CTGCCGATCC AAGAGGACGG AACCGGACTG GTGCTCTGGG GACTCTGGAA ACATTTTGAG TATACCGGAA ACGTGGAGTT CCTGGCCTCG CTGTACCTGT CCGTGGTCAA GCCCGCGGCC GACTTCATGG TCCGTTACCG CGAACCGCGC ACCGGCCTGC CGCACCAGAG TTTTGACCTC TGGGAGGAAC GCAAGGGCGT GTTCACCTTC ACCGCCGCAG CCGTTTGGGC CGGGCTGACT GCCGCCGCCC GCTGCGCGCG GCTTCTGGGC GACGGTGCGG CTCAGGAGAA ATGGGAGGAA GCGGCGGGAA AGGTGCACGC CGGCATCCTG CGGGAACTCT TCGATCCGGA ACTGAACCGG TTCATCCGGG GGCGCTTCAA AGGGGGTGAC GGGTCCTGGG TCGAGGACCA CGCTCTGGAC GCCAGCCTTT ACTGGATCTC CGGGCTGGGA GTCCTGCCCC CCGACGATCC CCGGGTGAAA GCGACCATGC AGGCCGTGGC GGAGGGATTG TGGGTGAAGA CCGACATCGG AGGCGTGGCG CGGTACGCCA ACGACTACTA TTTCAAACGG AGCGACGATA TCGAAAAAGT ACCAGGCAAT CCCTGGTTCA TCTGTACCCT ATGGTTGGCG AACTGGTACG TCGATTCGGC AGAGACACCG GCGGAACTGG CGAAGGCCCG CGAACTCCTG AAATGGGCCC ACCGTTACCG GCTGGACACA GGCATACTGC CGGAGCAAGT GCACCCCTAC ACGGGCGAGC CGCTTTCGGT GGCGCCCCTG ACCTGGTCCC ACGCCACCTT TTGCCAGGTG GTGTTAAGCT ACCTGGCCAA ATGGCACGCC TTCCGGGACT TGCCACTGAA ACCGGAGAGC GGTTATGATT AG
|
Protein sequence | MPRDIVLGNG SMLVNLDRNL SLRDLYYPFV GMENHIAGGR CLLGVWVDGQ FSWVQNPQWQ KEAGYVPGTL ISLVRAVHSG LGLEVTVEDA VHYRQNLFLR RIHVRNRWRD RRELRLFFVN DFHVGGWDIG DTALYDPISR AVCHYKRDYY FYVSGNCQGQ PIYQYHVQKR FGGREGSARD AEDGVLSGNP IDQGSVDSTI SFRAALEPEG EVQADLWIAA GRSLDEVRNL HAWVADNEAD RLMNETASFW RHWLALAERD WADLPAEVVA LFKTSLLVTR TQIDNNGAVL AANDTDILST NRDHYSYVWP RDGALVARML DGAGYHEITA AFYRFCARTI SREGYFYHKY NPDGTVGSSW HPWTAEVEEG LPIQEDGTGL VLWGLWKHFE YTGNVEFLAS LYLSVVKPAA DFMVRYREPR TGLPHQSFDL WEERKGVFTF TAAAVWAGLT AAARCARLLG DGAAQEKWEE AAGKVHAGIL RELFDPELNR FIRGRFKGGD GSWVEDHALD ASLYWISGLG VLPPDDPRVK ATMQAVAEGL WVKTDIGGVA RYANDYYFKR SDDIEKVPGN PWFICTLWLA NWYVDSAETP AELAKARELL KWAHRYRLDT GILPEQVHPY TGEPLSVAPL TWSHATFCQV VLSYLAKWHA FRDLPLKPES GYD
|
| |