| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0667 |
|---|
| Symbol | |
|---|
| ID | 6025428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 698905 |
|---|
| End bp | 699930 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641593496 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001716833 |
|---|
| Protein GI | 169830851 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1533] DNA repair photolyase |
|---|
| TIGRFAM ID | [TIGR00620] spore photoproduct lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00881865 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCTT TCGCCCCCGC CAGGGTCATC TTTGAGAGAG AAGCACTCGA ATATCCCCTG
GGCCGGTCGC TGTACGAGCG GTTCTCCGCG GAAGGTTTCA AGGTGGAGTT CACCGGTTCG
CACAACCGGG TCGGGACTAT ACCGGGCAAA ACCCCGCGGG AGGCTTATGC GGAAGCCAAG
AAAACCCTGG TGTTCGGCGT CCGGCGCACC CTTGATTTTC AAACCTGCAA GCCTTCCGCC
CATTACCAGC TCCCGCTGAC CACCTCCTGC CCCGGCAAGT GTGAGTACTG CTACCTGATG
ACCAGCCTGC CGGCGAGGCC GTATGTCCGG GCCTACGTGA ACATCGAGGA GATTCTGAGC
CGGACCCGTC AGTACATCGA TCAACGCAAG CCCCAGATTA CCCTGTTTGA GGGTTCAGCC
ACTTCCGACC CGGTACCGGT GGAAAGATAT ACCCGCGCCC TGGCCGATAC GATAAGGTTT
TTCGGCGGCC AGGAGTACGG CCGTTTCCGG TTCGTCACCA AGTTCACCGA CCTCGATACC
CTGCTGGATG TGGAACACAA CGGCCGCACC ACCATCCGCT TCAGCGTCAA CATTCCGGAG
ATCATCCGGG CCCACGAGCA CGGCACCCCG TCCCTCGCCA AGCGCCTGGA GGCCGCCGGC
AAGGTGGCCC GGGCCGGATA CCCGGTGGGT TTCATGGTCG CCCCCATCAT CCTGGACGGC
GACCCCCGGG GAATCGCGGT GTACCAGGAG TTGCTGGAAG AGATCCGTTC CCGAATCAAC
GGGCTGGACA ACCTGTCTTT TGAGTTCATC ACGCACCGGT TCACCGCACG GGCCGAGAAA
CGAATCCGGG AGATTTTCCC CCGGACCAGG CTACCCATGT TGGGGGAGAA CCGTCGTTTC
AAGTTCGGTC AATTCGGTTA CGGGAAGTAT GTGTACACGC CGGAGTTGAT GGAGGCCGCC
AAAAAGGCCC TGATTTCAAA AACCAAGGCG CTGTTCCCGG AATCCAAAAT CGAGTATTTC
GTGTGA
|
|---|
| Protein sequence | MSAFAPARVI FEREALEYPL GRSLYERFSA EGFKVEFTGS HNRVGTIPGK TPREAYAEAK
KTLVFGVRRT LDFQTCKPSA HYQLPLTTSC PGKCEYCYLM TSLPARPYVR AYVNIEEILS
RTRQYIDQRK PQITLFEGSA TSDPVPVERY TRALADTIRF FGGQEYGRFR FVTKFTDLDT
LLDVEHNGRT TIRFSVNIPE IIRAHEHGTP SLAKRLEAAG KVARAGYPVG FMVAPIILDG
DPRGIAVYQE LLEEIRSRIN GLDNLSFEFI THRFTARAEK RIREIFPRTR LPMLGENRRF
KFGQFGYGKY VYTPELMEAA KKALISKTKA LFPESKIEYF V
|
|---|
| |