Gene Daud_0623 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_0623 
Symbol 
ID6027072 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand
Start bp662307 
End bp663425 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content67% 
IMG OID641593452 
Productriboflavin biosynthesis protein RibD 
Protein accessionYP_001716789 
Protein GI169830807 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis 
TIGRFAM ID[TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.56623e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGACCAAG AATACATGCG GATGGCTCTG GACCTTGCTG TCAGGGCGCG GGGTCGCACC 
AGTCCGAATC CCCTGGTTGG TGCGGTGGTG GTCCGGGACG GTGAGATTGT GGGCCGTGGG
TATCACGCTC GGGCCGGTCT GCCCCATGCC GAGATTGTGG CGCTTGCCCA AGCCGGTGAG
GCGGCGCGTG GGTCCACCCT CTATGTTTCT TTGGAGCCGT GCTGCCACTT CGGCCGGACC
GGTCCCTGCA CCGAGGCGGT GATTGCGGCC GGCGTGCGGC GGGTTGTGAC GGCGATGCGG
GATCCCAATC CCAAGGTTGC CGGTAGGGGT ATTGCGCGGC TGCGCGAAGC AGGCGTTGAG
GTCACCGAGG ACGTCCTCCG CGATGAGGCA GCCCGGTTGA ATGAGATATT CATTAAGTAC
ATCACCACCG GCAGGCCGTT TGTGGCCTTA AAGGTGGCCG TGAGCCTGGA TGGCAAGATC
GCCACACGCA CCGGCGATTC GCGCTGGATT ACCGGTGGGC CGGCCCGGGA ATACGCCCAC
CGGCTGCGGG ATACGTACGA CGCGCTTCTG GTGGGGCGGG GAACCGTGGT CAAAGACGAC
CCGTCTTTGA CCACCAGGCT TCCCGGAGGG GGCCGGGATC CGGTGCGGAT TGTGTTGGAC
AGCCTGGCTC GCATCCCGGA ATCGTCCCGG GTACTGTCGG GGGAATCGAC CGCCCCGGTC
ATCGTGGCGG TGACCGGGCA GGCTCCCCGG ACTCGGGTGG CCGGCCTGGA GAGCCGGGGC
GTCCAGGTGG TGCGCTGTGG GCCGGGACCG GCGGTCGATC TGGAGGTGCT GCTCCGGGAA
CTGGCCGCCC GGGAGATCAC CAGCGTGATG GTGGAAGGCG GGGCGACGGT GCACGCTTCG
TTTCTGGAGG CCCGGTTCGT TGATAAGCTG CACTGGTTTG TGGCCCCGAA GATCGTGGGC
GGGGTGGAAG CTCCGGGGGC GGTCGCCGGC CGGGGTGTGG GGCGCATATC CGAGGCGGTC
GGCCTGGAAC GGGTGCGCCG GATCGAATTG GGGAACGATT TGTGTATCGA GGGCTATCCG
GTGTGGGGGG GGGCGGCGGA TGTTCACCGG GATTATTGA
 
Protein sequence
MDQEYMRMAL DLAVRARGRT SPNPLVGAVV VRDGEIVGRG YHARAGLPHA EIVALAQAGE 
AARGSTLYVS LEPCCHFGRT GPCTEAVIAA GVRRVVTAMR DPNPKVAGRG IARLREAGVE
VTEDVLRDEA ARLNEIFIKY ITTGRPFVAL KVAVSLDGKI ATRTGDSRWI TGGPAREYAH
RLRDTYDALL VGRGTVVKDD PSLTTRLPGG GRDPVRIVLD SLARIPESSR VLSGESTAPV
IVAVTGQAPR TRVAGLESRG VQVVRCGPGP AVDLEVLLRE LAAREITSVM VEGGATVHAS
FLEARFVDKL HWFVAPKIVG GVEAPGAVAG RGVGRISEAV GLERVRRIEL GNDLCIEGYP
VWGGAADVHR DY