Gene Daud_0600 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_0600 
Symbol 
ID6025471 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand
Start bp636869 
End bp639004 
Gene Length2136 bp 
Protein Length711 aa 
Translation table11 
GC content62% 
IMG OID641593429 
ProductDNA topoisomerase I 
Protein accessionYP_001716766 
Protein GI169830784 
COG category[L] Replication, recombination and repair 
COG ID[COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I 
TIGRFAM ID[TIGR01051] DNA topoisomerase I, bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00101448 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGAGAAGA CTCTGGTGAT TGTTGAATCC CCGGCCAAGG CCAGGACGCT CGGCAAGTTC 
CTGGGGAAAA AATACGAGAT TCGGGCTTCC ATGGGGCACG TCCGTGATCT TCCCCGGAGC
CAGTTCGGCG TGGACGTTGA TGACGGGTTT AAGCCCAAGT ACATTACCAT TCGGGGCAAG
GGAGACGCCA TCAAGGAACT GCGGGCCGCC CGCAAGAAGT CGAACCAGGT GCTTTTGGCT
TCGGACCCCG ACCGTGAAGG GGAAGCTATC GCCTGGCACC TGCAGGAACT GCTCCAGATT
GACCCTGAAG AGCCTTGCCG CGTGGAATTC AATGAAATCA CCAGGGAAGC GGTGACGGCG
GCGATCAAGA ATCCTCGCAA GATCGACCCG AACCGGGTTG ACGCCCAGCA GGCGCGGCGG
ATTCTGGACC GGCTGGTCGG CTACAACCTG AGCCCCCTGC TGTGGCGCAA AGTTCGCAAG
GGTTTGAGTG CCGGCCGGGT GCAGTCGGTG GCGGTGCACC TGATCTGTGC GCGCGAGCGG
GAGATCGAAG CCTTCGTGTC CGAGGAATAC TGGACGCTTA CCGCGCTCCT GGCCAACAGG
GAGCGCGAAA GGTTCAAGGC CCGGTTGCTC AAGAAAGCCG GGGAGAAGCT CACGGTGCCG
AACGAGGAGG CCATGAAGGG GATCCTGGAC GACCTGAAGG AGGAAGTTTA CCGGGTCGCG
GATGTGATCC GGAAAGAGAA AAAGAAAAAC CCGTCCCCCC CGTTCACCAC CAGCACCCTG
CAGCAGGAGG CCTACCGGCG CCTGAATTTC ACCACCCGGA AGACGATGAT GGTCGCCCAG
CAGCTTTACG AGGGTCTGGA CCTGGGTAAG GAAGGGCCGG TCGGCCTGGT CACCTATATC
CGGACTGATT CGACCCGGAT TTCCCCCGGA GCCCAGGACG AGGCCCGGGA GTACATCGCC
GAACACTACG GTAAGGAGTA CGTGCCGAAG CAGAAAAGGG TGTACACCGG CAAGGCGCGG
GCCCAGGACG CGCATGAGGC CATCCGGCCC ACGTCTGTGT TGCGGACTCC GGAGGCGCTG
AGAAAGTACC TGAATCCGGA CCAGCTGCGC CTGTATGAAT TGATCTGGTC CCGTTTTCTC
GCGAGCCAGA TGGTTAGCGC GGTTCTGGAC ACGGTGCGGG CCGAAATCGT GGCCGGAGAG
TACCTTTTCC GGGCCACGGG CTCCACGGTG AAATTCCCCG GCTTCACGCG GGTCTACACC
GAGTTGCGGG ACGAGGCCAA AAACGGCGAG GAGGAAGAGG AAGGGGCGCT CCCGGCGCTT
GAAAAGGGGG AGCAGCTGAA ACTGGTGCGC ACCACGCCGG CCCGGCACTT TACGCAGCCG
CCGGCCCGGT ACACGGAAGC CACCCTGGTG CGAACCTTAG AGGAACTTGG CATCGGCCGT
CCGAGCACGT ATGCGCCGGT GGTGGAGACA ATTCAGCGGC GGGGCTACGT GGTCCGGCGC
GGTAAAACGC TCCACCCGAC CCAATTGGGT TTGGTGGTCA TCGACCTTTT GAAGGAACAC
TTCCCGGACG TAATCAACTA TGAGTTCACC GCCGAGTTGG AGGAAAAACT GGACCGGATC
GAAGAAGGAT CCATGCAGTG GGAAAAGGTG CTCGAGGAGT TCTACCGGCC CTTCCGCCGG
GAAGTCGCCG AGGCGGAAGC GAAGATCGAC CGGGTCCGGC TGGACGAGGT CACCGACGAG
GAGTGCCGGA AATGCGGCCG CAAAATGGTG ATCAAGATGG GTCGGTACGG CAAGTTCCTG
GCCTGCCCCG GGTTTCCCGA ATGCCGCCAT ACCCGGCCGA TCTTCGAGGA GACCGGCCAC
CGCTGTCCCA AGTGCGGCGG CCGGGTGGTG GTCAGGCGGA CCAAGAAGAG CAAAGTTTTC
TACGGTTGTG CCGGATACCC CGGGTGTGAT TTCGTGACCT GGGACCAGCC GACCGACCAG
AAATGCCCCG ACTGCCAGTC TTTCCTGGTG GCCAGGGGCA CCCGGGGGCA CCCGCTTCAG
CGGGTCAGCG GGTCAGCGGG TCAGAGCCGC ACCTTTGCCT GCGCCAATCC GGAATGCGGC
TACAAGGAAC GCAAAGCCGG ACGGGGAAAG GCCTGA
 
Protein sequence
MEKTLVIVES PAKARTLGKF LGKKYEIRAS MGHVRDLPRS QFGVDVDDGF KPKYITIRGK 
GDAIKELRAA RKKSNQVLLA SDPDREGEAI AWHLQELLQI DPEEPCRVEF NEITREAVTA
AIKNPRKIDP NRVDAQQARR ILDRLVGYNL SPLLWRKVRK GLSAGRVQSV AVHLICARER
EIEAFVSEEY WTLTALLANR ERERFKARLL KKAGEKLTVP NEEAMKGILD DLKEEVYRVA
DVIRKEKKKN PSPPFTTSTL QQEAYRRLNF TTRKTMMVAQ QLYEGLDLGK EGPVGLVTYI
RTDSTRISPG AQDEAREYIA EHYGKEYVPK QKRVYTGKAR AQDAHEAIRP TSVLRTPEAL
RKYLNPDQLR LYELIWSRFL ASQMVSAVLD TVRAEIVAGE YLFRATGSTV KFPGFTRVYT
ELRDEAKNGE EEEEGALPAL EKGEQLKLVR TTPARHFTQP PARYTEATLV RTLEELGIGR
PSTYAPVVET IQRRGYVVRR GKTLHPTQLG LVVIDLLKEH FPDVINYEFT AELEEKLDRI
EEGSMQWEKV LEEFYRPFRR EVAEAEAKID RVRLDEVTDE ECRKCGRKMV IKMGRYGKFL
ACPGFPECRH TRPIFEETGH RCPKCGGRVV VRRTKKSKVF YGCAGYPGCD FVTWDQPTDQ
KCPDCQSFLV ARGTRGHPLQ RVSGSAGQSR TFACANPECG YKERKAGRGK A