Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daud_0525 |
Symbol | |
ID | 6026569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Desulforudis audaxviator MP104C |
Kingdom | Bacteria |
Replicon accession | NC_010424 |
Strand | - |
Start bp | 562922 |
End bp | 563551 |
Gene Length | 630 bp |
Protein Length | 209 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641593362 |
Product | HAD family hydrolase |
Protein accession | YP_001716699 |
Protein GI | 169830717 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00124351 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGACCGTAA GAGCCGTGCT TTTTGACCTG GACGGAACGT TGATCGACAC GATTCCCTTG ATCCGCTGGA CCTTCGAACG GGTTTTCGCA GACTTCGGCC TGCCCTGGGA AAACGGTGAA GTGCTGCACA CCGTGGGACT CCCCCTGCGG GAAATTGCCG CCCGGTATAT GCCGGACCGG GCGGACGAAT TCATGGAACG GTATGCAGCC TTCCAGAAGA CCAGATTCAG GGAACTGACC AGAGCTTATC CGGGAGCCGT GGAAACCTTG GCAACCATCA AGTCAGCCGG CTACCGCACC GGAGTGGTCA CCTCCAAACG TCGGGAACCC GCCCTGGCAA GTTTGGCCCT CACCGGACTT GACCAACACA TCGAAGCGGT CGTGACCGCG GATGACGTAA CCAAGCCAAA GCCCGACCCG GAACCCGTGT TCAAGGCCCT TGAACTTCTG CACACGCGGC CCCAGAACGC GGCTTACATC GGCGACAGTT GGTACGACGT CGTAGCCGGC AAACAGGCCG GCGTGACCAC CGTCGGCGCG ACATGGGGCA TAGCGAGTCG GGAACAACTG GCCGAACACG CCCCCGACAT CATCGTGGAT TCCTGGGACG AGTTTCTGGC TAACCTGTAG
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Protein sequence | MTVRAVLFDL DGTLIDTIPL IRWTFERVFA DFGLPWENGE VLHTVGLPLR EIAARYMPDR ADEFMERYAA FQKTRFRELT RAYPGAVETL ATIKSAGYRT GVVTSKRREP ALASLALTGL DQHIEAVVTA DDVTKPKPDP EPVFKALELL HTRPQNAAYI GDSWYDVVAG KQAGVTTVGA TWGIASREQL AEHAPDIIVD SWDEFLANL
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