| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0329 |
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| Symbol | |
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| ID | 6027583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Desulforudis audaxviator MP104C |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010424 |
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| Strand | + |
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| Start bp | 352510 |
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| End bp | 354630 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641593181 |
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| Product | ribonuclease R |
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| Protein accession | YP_001716519 |
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| Protein GI | 169830537 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00226264 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTACTA GAGATGAAAT TTTGGAGTAC ATGCGCAAGG ATGCCTACCG GCCCATGACC
GAGGATGAAC TTCTCCGGGC CTTCGCCGTA AAAAAGAGCG GTGCGCGCGG CTTCAAGAAG
CTGCTTGGGG AAATGGAGAT CGAGGGTTCG ATTTATAAGA CGCGGGCGGC CCGTTACGGT
CTGCCCGAGA AGATGAATCT CACCGTGGGT AGACTGCAGG GCCATCCCCG CGGCTTCGGC
TTCGTCATTC CCGACAACCG GGAACACCCG GACGTGTTCA TCAGCGCGGC GGCCCTGAAT
GGCGCGATGC ACGGGGACCG GGTGGTGGCG CGGGTCACCC CCGGCCGGAA CGATAAGAAA
GAGGGCGAAG TGATCAAGAT CCTGCACCAC GCCAACGAGC GGGTGGTCGG GACCTTCCAG
AAAAGACAGA ACTACGGATT CGTGGTCTGC GACGAGCCCC GCCTGCCGCA CGACGTGTTC
GTGCCGCGGG GCAGGCTGAA CGGGGCCCGT TCCGGAGACA AGGTGGTGGT CGCCCTCACC
GCCTGGCCCG GCAAACGCCG TGGCCCGGAG GGCAAGATCA CCGAGGTGCT GGGAGCCGCG
GACGAGCCCG GGATGGACAT CCTGGCGCTC TGCCGCCGGT ACGGATTACC GGAAGGTTTT
CCGAAACAGG CGCTCAAGGA AGCGGAACAG ATTCCGGAAA CGGTCACCGC GCGGGACCTG
GCCGGCCGGC GTGACCTGCG GGACCAGGCC ATTGTCACCA TCGACGGTGA GGACGCCAAG
GACCTGGACG ACGCGGTGAG CTTAGAGCCC CTGCCCGGCG GCCTGTACCA ATTGGGAGTG
CACATCGCCG ATGTTGGGTA CTACGTGTCT GAGGGGAGCG CCCTGGACCG GGAGGCCTAC
GCGCGGGGCA CAAGTTTTTA CCTGCCCGGC AAGGTCATCC CCATGCTCCC CGAACGGCTC
TCCAACGGGA TCTGCAGCTT AAATCCCCAA GTGGACCGTC TGGCGCTGTC CGTCCTGATG
GATATCGACC GCGGGGGCGA AGTGATCCGG TACGAAATCT TTCCGTCGGT GATCCGGACC
CGGGAGCGGC TGACCTACAC GGCGGTCCGG CAGGTTTTGA CCAACGGGGA CGAAGAGACC
ACGAAACGCT ACGCGGACCT CCTCCCCATG CTGCGCCTGA TGCAGGAGTT GGCCCTGGTG
CTGCGCACCC GGCGGTTCCG CCGGGGGGCG ATCGATTTCA ATCTGCCTGA GGTCAAGGTG
CTCCTGGACG AAAAAGGCCG GGTGCAAGAC CTGGTGAAGG TGGAGCGGAC GATCGCCGAA
CAGCTCATCG AGGAATTCAT GCTGATGACC AACGAGGTGG TGGCCAGACA CCTGCACAAA
CTGGAAGTGC CTTTTCTGTG CCGGGTGCAC GAGAAGCCGG ACAGCGAGAA GCTGGAGAAC
CTGCAAGCCC TGCTCCAGAC CCTGGGCTAC GCCATTCCCG GCTATCCCCG GGTCCGGCCC
GGCGCGCTGC AGGACATCCT GTCGCGCGTG GCCGGGAAGA AAGAGGAGCG GCTGGTCAAC
GATGTGACGC TGCGCTCGAT GCAGCAGGCG CGCTACCACC CCGGGCCGCT GGGGCACTTC
GGGTTGGCGT CCCGGGACTA CACCCACTTC ACCTCCCCGA TCCGGCGCTA CCCCGATTTG
GTGAACCATC GGCTCATCCG GGAGGTGCTG GCGACCGGGG GAACCTTGAG TGAAACCCGG
AAAAAAGCTC TGCAAAACTG TCTGCCCGAC ATCGCGAAGC AGTCGTCCGA ACGGGAGCGG
CTGGCGGTGG AGGCCGAGCG GGAGGCCGTG GACACTAAGA AAGTGGAATA CATGCAAAAC
CGGATCGGCG AGGTATACCC GGGGATCATC AGCGGGGTGA CCGGCTTCGG GATGTTCGTG
GAATTGGACA ATACGGTGGA GGGTCTGGTC AGCCTGACCA GCATGGCCGA CGACTACTAC
GACTACGACC AGCCGGGCTT CCGACTCGTC GGCCAGCGCA CCGGCAAGGT CTACCGGCTG
GGAGACGAGG TCACCGTAAA AGTGGTGCGG GCCAGCGTTG AAGACCGCCA GATCGACTTC
ACCCTCTGCA GCCCGCTCTA A
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| Protein sequence | MATRDEILEY MRKDAYRPMT EDELLRAFAV KKSGARGFKK LLGEMEIEGS IYKTRAARYG
LPEKMNLTVG RLQGHPRGFG FVIPDNREHP DVFISAAALN GAMHGDRVVA RVTPGRNDKK
EGEVIKILHH ANERVVGTFQ KRQNYGFVVC DEPRLPHDVF VPRGRLNGAR SGDKVVVALT
AWPGKRRGPE GKITEVLGAA DEPGMDILAL CRRYGLPEGF PKQALKEAEQ IPETVTARDL
AGRRDLRDQA IVTIDGEDAK DLDDAVSLEP LPGGLYQLGV HIADVGYYVS EGSALDREAY
ARGTSFYLPG KVIPMLPERL SNGICSLNPQ VDRLALSVLM DIDRGGEVIR YEIFPSVIRT
RERLTYTAVR QVLTNGDEET TKRYADLLPM LRLMQELALV LRTRRFRRGA IDFNLPEVKV
LLDEKGRVQD LVKVERTIAE QLIEEFMLMT NEVVARHLHK LEVPFLCRVH EKPDSEKLEN
LQALLQTLGY AIPGYPRVRP GALQDILSRV AGKKEERLVN DVTLRSMQQA RYHPGPLGHF
GLASRDYTHF TSPIRRYPDL VNHRLIREVL ATGGTLSETR KKALQNCLPD IAKQSSERER
LAVEAEREAV DTKKVEYMQN RIGEVYPGII SGVTGFGMFV ELDNTVEGLV SLTSMADDYY
DYDQPGFRLV GQRTGKVYRL GDEVTVKVVR ASVEDRQIDF TLCSPL
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