| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0272 |
|---|
| Symbol | |
|---|
| ID | 6025655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | + |
|---|
| Start bp | 291930 |
|---|
| End bp | 293540 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641593126 |
|---|
| Product | SSS family solute/sodium (Na+) symporter |
|---|
| Protein accession | YP_001716465 |
|---|
| Protein GI | 169830483 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4147] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00870047 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATAACC CGATTGCCTT TACCATCGTC ATTGCGAGCA TTCTGCTCAC AATGTATATC
AGTTGGGCCA GCCGGCGGCA CACGAGAACG ACCGCGGCGT TTTACGTCGC CGAAGGGAAG
ATACCGTGGA GGCTCAACGG CGCCGCCATG CTGGGCGACT ATTGCAGCGC CGCCAGTTTT
CTGGGAGTCG CGGGCGCGGT GGCCCTGGTC GGCGTTGACG GCTGGTGGCT TGCTCTCGGC
TTCTTCGCGG CGTGGATAGT GGTGCTCCTT GTGATTGCCG GACCTTTGAA GAGCACGGGC
AAGTACACCG TGGGCGACGT CCTGAGCGCC CGCTTCGGCG GCCGGGAGAG CGGGATCAGG
ATCGTGGCGA TGCTCAGCAC CCTGGTGCTG TGCACTCTTT ACCTTGTTCC CCAAATGGTC
GGTGCCGGGC ACCTTTTTAA GCTCCTGCTC GGGTGGGACT ACCTGCCCAC CGTCCTGGTG
ACCGGCACAT TGATGGCGGT CTACGTGATC GTGGGCGGCA TGCGGGGAAC GACCTATAAC
CAGGCTATCC AGGGGATCCT TCTCTTTGGC GCAATGCTGG GCATCCTCAT ATGGGTCAGC
ATCTCTCACT TCGGGGGTAA CCCACTGGCG ATTGTGGAAA GAAGCCAGGA GATGGTTCCG
CCGGCGGTCG TGACGAAGGA AGTGGCCGGG ACGCTGGCCC AAATGGAAAC GGCGGATGCC
GCTGCCGCAG TCGCAACCGC CAGAGAGCAG ATGCCCGATG CACCCGACGC GATCACTCCG
GGAGTCGAGC TGCGGGACCT CGCGAACCAA GCCAGTCTGG TACTGGGGCT CTTTTTGGGG
ACGCTCGGGC TGCCGCACAT CCTGATCCGG TTCTACACTG TGCGGAACGC GCGGGCCGCC
CGTAAAAGCG CCGAGTTCAC GATCTGGGGG CTCGCTATCT TCTACGCCGC GGTCCTCCTG
GTCGGCCTGG CCGCGATGTA CGTTATGTAC CCCACGCTGG TCCAGCTTTT GGCCGAAGGC
CAGCGCGGGA AAGCGACCAA CATGGCTGTT CCAATGCTGG GTCAGTTGTT GGGCGGGGAA
ATAGTCCTGG GCATTATCGC CGCCGGAGCA ATGGCGGCCA TGCTGAGCAC GGCAGTGGGG
CTTCTTATTT CGGCTACCAC CAGCCTATCC CACGATCTTT ACGCTACCGT TCTGCGGCCG
CAAAGCACCG ACCGGGAACG GGTGCTTTTC GCGAAGACCG GCGCCGGGTT CCTGGCGGCT
GTATCGATCG TCCTCGCCCT TTGGCTCCGG GACCAGAACG TCGGCGTGCT CGTCGCGATG
TGCTTCGGCA TCGCGGCTAG CACTTTTGCG CCGGCTCTGG TCTTCACCGT TTGGTGGACC
CGGCTGACCA GGCAGGCGGT CGTGGCCGGG ATGGGCGTGG GTTTGGTGCT GTCGCTCGTG
CTGACCTTCG CCAAGTTCTT CAACGTGCCC CATCTCCTCG GCGTACCGGT GCTGGTCAAC
CCGGCGCTCT ACAGTGTCCC GGCGGCTATA CTGGTTACCG TGCTGGTTGC CTACCTGACG
AAAGACACCG GCCGGGCGGA TGAGTTTCTG GCCTCGGCCC ACGGCAGCTA G
|
|---|
| Protein sequence | MDNPIAFTIV IASILLTMYI SWASRRHTRT TAAFYVAEGK IPWRLNGAAM LGDYCSAASF
LGVAGAVALV GVDGWWLALG FFAAWIVVLL VIAGPLKSTG KYTVGDVLSA RFGGRESGIR
IVAMLSTLVL CTLYLVPQMV GAGHLFKLLL GWDYLPTVLV TGTLMAVYVI VGGMRGTTYN
QAIQGILLFG AMLGILIWVS ISHFGGNPLA IVERSQEMVP PAVVTKEVAG TLAQMETADA
AAAVATAREQ MPDAPDAITP GVELRDLANQ ASLVLGLFLG TLGLPHILIR FYTVRNARAA
RKSAEFTIWG LAIFYAAVLL VGLAAMYVMY PTLVQLLAEG QRGKATNMAV PMLGQLLGGE
IVLGIIAAGA MAAMLSTAVG LLISATTSLS HDLYATVLRP QSTDRERVLF AKTGAGFLAA
VSIVLALWLR DQNVGVLVAM CFGIAASTFA PALVFTVWWT RLTRQAVVAG MGVGLVLSLV
LTFAKFFNVP HLLGVPVLVN PALYSVPAAI LVTVLVAYLT KDTGRADEFL ASAHGS
|
|---|
| |