| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0216 |
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| Symbol | rpoB |
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| ID | 6027413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Desulforudis audaxviator MP104C |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010424 |
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| Strand | + |
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| Start bp | 243762 |
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| End bp | 247313 |
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| Gene Length | 3552 bp |
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| Protein Length | 1183 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641593070 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001716409 |
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| Protein GI | 169830427 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.846031 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCTTCG TTAAGCCCAG GGAGCGTCGT CTTTTTGGTA AACTCCGAGA GGTCCTCGAT
CTTCCCGACC TGGTAGAGGT TCAGAAGCGT TCTTACGACT GGTTTTTGGA CAAGGGGCTG
CGCGAGGTAT TCCACGACAT CTCTCCGATC CAGGATTTCA CCGGTAACCT GGTGCTGGAA
TTTCTGGACT ACCAGTTGGG GGAACCCAAG TACACCGTTC AGGAGTGCAA AGACCGCGAC
GTTACCTTTG CCGCCCCGAT GCGGATTAAG GTCCGTCTGA TCAACCGGGA GACCGGCGAG
GTCAAGGAAC AGGACGTGTT CATGGGCGAC TTCCCGTTGA TGACCGAGAA GGGGACCTTC
ATTATTAATG GAGCCGAGAG AGTCATTGTC AGTCAATTGG TTCGCTCGCC CGGGGTGTAC
TTTGACATCC AACCCGATCC CAGCGGCAAA CAGATTTACA GCGCCACCGT CATTCCGAAC
CGGGGGGCAT GGCTGGAGTT CGAGACCGAC GTCCAGGACC AGATCTGGGT GCGGGTCGAC
CGTACCCGCA AGATTCCGGC CACGGTGCTG ATCAAAGCTT TGGGTTTTGG GAACAAGGCG
CGCATCCTGG ACCTCTTCGA CCAGCACAAA AGCATTCAGG AAACCCTCAA CAAGGACAAC
ACCGACAGCG AGGAAGACGC CCTTATTGAG ATCTACAAGC GCTTGCGGCC GGGAGAACCG
CCGACCGCCG ACAGTGCCCG TTCCCTCCTG GAAACCCTTT TCTTTGACCC GAAGCGGTAC
GACCTGGCGG CAGTCGGGCG CTACAAACTG TTCAAGAAGT TAAAGCACGG GGTACTTTAC
CGCTTCGACA AGGAGCAGAG CGGCCGGACC GAATTCGACC CCTACCTGAA GCAGGAAGTG
CCGGTGGAGC GTGAGTTCAT CCGTGAACTC ACCCGCGAGG ACATCCTGGC GACCGTCCGG
TACCTGATCA GATTGATGCA GGGCGAGGGC CGGGCCGACG ACATCGACCA CCTGGGCAAC
CGCCGGTTGC GGTCGGTGGG CGAGTTGCTA CAGAACCAGT TCCGGATCGG CCTGGCACGG
ATGGAACGGG TGGTGCGGGA GCGCATGACC ATCCAGGACG TCGAGGTGAT CACCCCGCAG
GCCCTCATCA ACATTCGCCC CGTGGTGGCG TCGATCAAGG AGTTTTTCGG TTCAAGCCAG
TTGTCTCAGT TCATGGACCA GACCAACCCG CTGGCCGAGC TGACTCACAA GCGCCGGCTC
TCGGCTCTGG GTCCGGGAGG CCTGTCCCGG GAGCGGGCCG GGTTTGAGGT CCGGGACGTG
CACCATTCCC ATTACGGCCG GGTGTGCCCG ATTGAGACCC CGGAGGGTCC GAACATCGGC
TTGATCGGGT CACTGACCAC CTACGCGCGG GTGAACGAGT TCGGGTTTAT CGAAACTCCC
TACCAGAAAG TGGACAAAGA AAAACGGCGG GTCACCGAAG AGATCGTATA CCTGACCGCC
GACGAGGAAG AAGAATACGT GATCGCCCAG GCGAACGTGG AGTTGGACGA GAACGGGCAC
TTCGTGGAGA ACAGGGTGGA CTGCCGCTAC CGGGGCGAGA TCATGGTGGT AGACGCCGGC
CGGGTCGACT ACGTAGACGT ATCGCCCAAG CAAGTGTTTT CCGTGGCGAC GTCCCTGATT
CCCTTCCTGG AGCACGACGA CGCCAACCGG GCCCTGATGG GGGCCAACAT GCAGCGTCAG
GCTGTACCGC TTTTGATTTC CGAGGCCCCT TTCATCGGCA CCGGTATCGA AGCAAAAGCG
GCCTACGACT CCGGGGTGCT GGTGATCGCC GAAAGGGGCG GAGTCGCGGA GCGGGTGACT
GCCACCGAGA TCAAGATCCG TACCAGCTCC GGGGCGGTGG ATCACTACCG CCTGACCAAA
TTCGGACGTT CCAACCAGGG CACCTGTTTC AACCAGCGCC CGATCATCTC CCGGGGCGAT
AGAATCGCGG CCGGGCAGGT GATTGCGGAC GGCCCGTGTA CCGACCACGG AGAACTGGCG
CTGGGGCGGA ATGTCCTGAC CGCGTTCATG CCCTGGGAAG GTTACAATTA TGAAGACGCG
ATTCTGGTGA GTGAGAAGCT CGTCAAGGAA GACCTTTACA CCTCGATCCA CATCGAGGAG
TACGAGTGTG ACGCCCGGGA TACTAAACTG GGTCCGGAGG AGATCACCCG GGACATCCCC
AACGTGGGGG ACGAGGCTTT AAAGGACCTG GACGACCGGG GTGTGATCCG GATCGGGGCC
GAGGTCCGGT CGGGTGACAT CCTGGTCGGC AAGGTGACTC CCAAAGGTGA AACCGAGCTT
ACCGCCGAGG AACGGCTGCT CCGGGCGATC TTCGGGGAGA AGGCCCGCGA GGTCCGGGAC
ACCTCGTTGC GGGTCCCGCA CGGGGAATCG GGCAAAGTAG TGGACGTAAA AGTATTCTCC
CGGGAAAACG GCGACGAGCT GCCCCCGGGA GTGAACCGGC TGGTGCGCGT GTACGTGGCC
CAGAAACGGA AACTCTCCGA AGGCGACAAG ATGGCCGGCC GCCATGGGAA CAAGGGGGTC
ATCGCCCGGA TCATGCCCGA GGAGGACATG CCCTTCATGC CGGACGGCAC CCCGATTGAA
GTGGTATTGA ATCCCCTGGG GGTACCGTCC CGGATGAACA TCGGCCAGGT GTTCGAATCC
CACCTGGGGT GGGCGGCCAA GATCCTGGGC TACAATATCG CCACCCCGGT GTTCAGTGGC
GCCAGTGAGG CCGAAATCAT CCGGACTCTG GAGGAGTCCG GCCTGCCGAC GGACGGTAAG
GTGAGGCTGC GTGACGGGCG GACCGGGAAG GAATTTGACA ACCCGGTGAC CGTCGGCTAC
CTGTACATGC TGAAACTGGC CCACCTAGTG GACGACAAGA TTCACGCCCG TTCCACTGGG
CCGTATTCCC TGGTTACCCA GCAGCCGCTG GGGGGCAAGG CCCAGTTTGG CGGGCAGCGT
TTCGGGGAAA TGGAGGTCTG GGCGCTGGAG GCTTACGGTG CCGCCTATAC CCTGCAAGAA
ATTCTAACGG TGAAGTCGGA CGACGTGGTC GGCCGGGTGA AAACATACGA GGCCATCGTC
AAGGGCGAAA ACGTTCCCGA GCCCGGGGTG CCGGAGTCCT TCAAAGTACT GGTCAAGGAG
CTGCAGAGCC TGGGTCTGGA CGTCAAAGTC CTGACCGAGG AAAACACCGA GATCGAAATC
AAGGAACTCG ATGAGGATGT GACCGAAACC GGCAAGGAAC TGGGACTCGA CTTCCGGATG
CCGGAGCCGA GAACCAAGGC GGTGTCCGTT GAAGAAGAGG ATGATATCCA GGACGGCGGG
GTTTTGCTGC ACGACACGGA GGCACAGGCC GACGACGGAG ACGAGGAGGA CGAAGAGGAG
CTCGAAAAGC CCCTGCGGGG CTTGTTCCCG CTGGTGGTTG AAGAGGAAGA GATTGATGAG
GACGATGAAC TCGGCGGGAG TTTTGAAGAA GAAGCTGACG GAGAAGAGGA AGGGGAGTCG
GACGACAACT AG
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| Protein sequence | MPFVKPRERR LFGKLREVLD LPDLVEVQKR SYDWFLDKGL REVFHDISPI QDFTGNLVLE
FLDYQLGEPK YTVQECKDRD VTFAAPMRIK VRLINRETGE VKEQDVFMGD FPLMTEKGTF
IINGAERVIV SQLVRSPGVY FDIQPDPSGK QIYSATVIPN RGAWLEFETD VQDQIWVRVD
RTRKIPATVL IKALGFGNKA RILDLFDQHK SIQETLNKDN TDSEEDALIE IYKRLRPGEP
PTADSARSLL ETLFFDPKRY DLAAVGRYKL FKKLKHGVLY RFDKEQSGRT EFDPYLKQEV
PVEREFIREL TREDILATVR YLIRLMQGEG RADDIDHLGN RRLRSVGELL QNQFRIGLAR
MERVVRERMT IQDVEVITPQ ALINIRPVVA SIKEFFGSSQ LSQFMDQTNP LAELTHKRRL
SALGPGGLSR ERAGFEVRDV HHSHYGRVCP IETPEGPNIG LIGSLTTYAR VNEFGFIETP
YQKVDKEKRR VTEEIVYLTA DEEEEYVIAQ ANVELDENGH FVENRVDCRY RGEIMVVDAG
RVDYVDVSPK QVFSVATSLI PFLEHDDANR ALMGANMQRQ AVPLLISEAP FIGTGIEAKA
AYDSGVLVIA ERGGVAERVT ATEIKIRTSS GAVDHYRLTK FGRSNQGTCF NQRPIISRGD
RIAAGQVIAD GPCTDHGELA LGRNVLTAFM PWEGYNYEDA ILVSEKLVKE DLYTSIHIEE
YECDARDTKL GPEEITRDIP NVGDEALKDL DDRGVIRIGA EVRSGDILVG KVTPKGETEL
TAEERLLRAI FGEKAREVRD TSLRVPHGES GKVVDVKVFS RENGDELPPG VNRLVRVYVA
QKRKLSEGDK MAGRHGNKGV IARIMPEEDM PFMPDGTPIE VVLNPLGVPS RMNIGQVFES
HLGWAAKILG YNIATPVFSG ASEAEIIRTL EESGLPTDGK VRLRDGRTGK EFDNPVTVGY
LYMLKLAHLV DDKIHARSTG PYSLVTQQPL GGKAQFGGQR FGEMEVWALE AYGAAYTLQE
ILTVKSDDVV GRVKTYEAIV KGENVPEPGV PESFKVLVKE LQSLGLDVKV LTEENTEIEI
KELDEDVTET GKELGLDFRM PEPRTKAVSV EEEDDIQDGG VLLHDTEAQA DDGDEEDEEE
LEKPLRGLFP LVVEEEEIDE DDELGGSFEE EADGEEEGES DDN
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