| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0051 |
|---|
| Symbol | |
|---|
| ID | 6027225 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | + |
|---|
| Start bp | 56360 |
|---|
| End bp | 57262 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641592905 |
|---|
| Product | Allergen V5/Tpx-1 family protein |
|---|
| Protein accession | YP_001716252 |
|---|
| Protein GI | 169830270 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2340] Uncharacterized protein with SCP/PR1 domains |
|---|
| TIGRFAM ID | [TIGR02909] uncharacterized protein, YkwD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000168583 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTCTG TGAACAAAAA GCTCGCCGTT GCAGTGGTAG CCCTGATGTT GTCCGTCGCC
CTGTTGATTC CGGCCACCCT GGCCCACGCC AACGCACCTT CTGCGGAAGA AAGCAAGTTG
ATCACGGGAA TAAACCAGGC CCGCCAGAAG GCGGGGGTTC AGCTTCTAAC CAATAGCGCC
CGTTTGAACG AGGTGGCCCT GACCCTCCTG ACGAACGGAA CCAGCGTATC GCTGGCGTTG
CGGGAGCAAG GAATCACCTA CCGGTCCGCC TGTACGCTGC GTGTAGGCTC CGGCAACGCG
GATCTGGTGG TCCGGGCTTT GACCGGATAC AGCTCGTCAC AGGTCTTGCA GCCGCAGTAC
AATCAGATCG GTGTAGCTAT CCGGAATAAC ACCACGGTGA TCGTTCTAAT CAACGGGGTT
ATTGCCGCGC AGCCGGCACC GCAAACGGCC CCGACTCCGG CACCGCAACC CGCGCCGTCG
CCGGCTCCCA TGCCGTCACC CGGCCCCTCC GGTTTGATGA CCGCGTACGA GATGAAGATA
GTTGAACTGG TGAACGCCGA GCGGGCTAAG CTCGGACTGA GGGCTCTGGC GGTTGACGCC
AAGCTGTCGC AAGTGGCCCG ATTAAAGTCC GAGGACATGC GGGACAAGCG CTATTTTGCC
CATCAATCTC CCACCTACGG TTCGCCGTTT GACATGATGA GACAGTTCGG AATTACCTAC
CGCACGGCCG GTGAGAATAT CGCCGCCGGC CAGCGTACCC CGGAAGAAGC CATGCGTGGG
TGGATGAACT CCTCCGGGCA CCGGGCCAAT ATCCTGAACC CCAATTTCAC TCACATCGGC
GTTGGGCATG TGGTCGGCGG GAGCTACGGC AACTACTGGA CGCAGATGTT TATCGGCAGA
TAG
|
|---|
| Protein sequence | MQSVNKKLAV AVVALMLSVA LLIPATLAHA NAPSAEESKL ITGINQARQK AGVQLLTNSA
RLNEVALTLL TNGTSVSLAL REQGITYRSA CTLRVGSGNA DLVVRALTGY SSSQVLQPQY
NQIGVAIRNN TTVIVLINGV IAAQPAPQTA PTPAPQPAPS PAPMPSPGPS GLMTAYEMKI
VELVNAERAK LGLRALAVDA KLSQVARLKS EDMRDKRYFA HQSPTYGSPF DMMRQFGITY
RTAGENIAAG QRTPEEAMRG WMNSSGHRAN ILNPNFTHIG VGHVVGGSYG NYWTQMFIGR
|
|---|
| |