Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caul_5122 |
Symbol | |
ID | 5897408 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Caulobacter sp. K31 |
Kingdom | Bacteria |
Replicon accession | NC_010335 |
Strand | + |
Start bp | 39812 |
End bp | 43030 |
Gene Length | 3219 bp |
Protein Length | 1072 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641555225 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001676556 |
Protein GI | 167621771 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGAACATCT CCAAGTACTT TATCGACCGG CCCATCTTCG CAAGCGTGCT TTCGGCCGTC GTCCTGTTGG GCGGGATCAT CTCGGTCTTC AAGCTGCCGA TCTCTGAATA TCCCGACGTC ATTCCGCCCC AGGTCCTGGT CCACGCCGAG TTTCCCGGCG CCAATCCCAA GGTTATCGCC GAGACGGTCG CCGCCCCGAT CGAGGAGAAG ATCAACGGCG TCCAGGACAT GCTCTACATG CAGTCCCAGG CCAACAGCGA CGGCAAGATG ACGACGACCG TCACCTTCAA GCTGGGCACC AATCCCGACC TCGCCCAACA GCTGGTGCAG AACCGCGTCA CCCAGGCCGT CCCCCACCTT CCCGAGGACG TACAGCGTCT GGGCGTGACG ACGGTCAAGG CCTCCTCGAC CATGACCTTG GCCGTGCAGA TCAGCGGCGA TCAAAATCAT GACCTGGCCT ATCTGCGCAA TTACGCCCTG ATCAACATCA AAGACCGCTT GGCCCGGATC CCTGGCGTCG GCGACGTGCA GCTCTACGGG GCGGGCGACT ACGCCATGCG GATATGGCTC GACCCCCAGA AGCTGGCCCA GCGCAACTTG ACCGCCACCG ACGCCGTCGC GGCCATCCGC GAGCAGAACG TCCAGGTGTC CGCCGGCATG ATCGGCGGCA CGCCGAACGT TCCGGGCGTG CCGCTGCAGC TGGACGTCAA CGTCAAGGGC CGCCTGCAGA GCGTCGAAGA GTTTGGCGAG ATCGTCGTCA AGACGGGTCC GGGCGGCGGC GTCATCTACC TGCGTGACGT GGCCCGGATC GAGTTGGGCG CGGCCGAGTA TGGCCAGCGA ACGGCGCTCA ACAACGGCCG CTCGATGGCG ATCTGGATCT TCCAGCTGCC GGGCGCCAAC GCCCTGCAGA TCGCCGACGC CGTGCGCAAG ACCATGGCCG AGGAAATCGG TCCGGAGATG CCGGCCGGCG TCAGCTATCG GATCGTCTAC GACCCCACCC GGTTCGTCAA AGCCAGCATC GAGGCGGTGA TCCACACCCT GCTGGAAGCC GTCGCCCTGG TCGTCCTGGT GGTGATCATG TTCCTCCAGA CCTGGAGGGC CTCGGTCATT CCCCTGCTGG CCGTGCCCGT GGCGATCGTC GGCACCTTCG CCTTCCTGCT GGGCTTTGGC TATTCGATCA ACGCTCTGTC GCTGTTTGGA TTGGTGCTGG CCATCGGCAT CGTGGTCGAT GACGCCATCG TCGTTGTCGA AAACGTCGAA CGAAACCTCG AAGCGGGGCT CTCGCCCAAG GCGGCCACCT ACAAGGCCAT GCAGGAAGTC AGCGGGCCGA TCATCGCCAT CGCCCTGACC CTGATCGCCG TGTTTGTGCC GCTAGCCTTC ATGTCGGGGC TGACCGGACA GTTCTACAAG CAGTTCGCCG TAACGATCGC CGTCTCCACG GTGATTTCCG CCTTTAATTC CCTGACGCTG TCGCCTGCCC TGGCGGCTCT GCTTCTACGC GCGCCCCATC AGCCCAAGGA TTGGCTGACG CGGGTGATCG ACAGGCTTTT TGGACCCGCC TTCAACGTCT TCAACACCGT CTTCAAGCGC GGCTCTCACG CGTACGGATC GGGCGTCACC AGCGCCCTGG GCCGCAAGTC GATCATGCTG GTGCTCTACG CGGTGCTGGT CGGCGGAGCC GTCTTGATGG GTAAGCTCGT GCCGGGCGGG TTCGTGCCGG CCCAGGACAA AGGCTACCTG ATCGCCGTCG CCCAACTTCC CGACGGCGCA TCGCTGGACC GCACCGACGC GGTGCTGCGC CAGATGTCGG ACCTCTCCAA GGGGGCGCCG GGCGTCCAGG ACGCCGTCCA GCACCCGGGC CTGTCGATCA ATGGCTTTAC GACCTCGTCC AGTTCGGGCG TCGTGTTCCT GGGGCTGACG CCGTTCGAAG AGCGGTACGG CCACGGCAAG CCGCTCGCGG CCGACCAGAT CGCCACGGCG ATGACGGAGC GTTTTGGCGC GATCAAGGGC GCCAAGATCG GGGTGTTCAA TCCGCCACCG GTTCTGGGTC TGGGCACCCT AGGCGGCTTC AAGTTTCAGA TCGAGGATCG CGGCGCCCAG GGCTACGCCG CGCTCAACGA CGCCACGAAC GCCTTCATCA AGGCCGCGGC GCAGGAGCCG GCCCTCGGTC CGATGTTTTC CAGCTACCAG GTCAACGTCC CGCAGCTGAA CGTCGACGTA AATCGGGTGA AAGCCAAGCA ACTGGGCGTG TCGGTGACCG ACATCTTCAC GACGATGCAG ATCTATCTGG GCTCGCTCTA CGTCAACGAC TTCAACCGCT TTGGCCGCGT CTACCAGGTC CGAGCCCAGG CCGACGCCCC GTTTCGGGCC TATGCCGACC ACATCGGTTT GCTCAAAACC CGCAATGCGG CCGGTGAGAT GGTGCCGCTG GGCAGCTTCT TGACCGTTAC GCCGGGCTAC GGCCCTGAGA TGGTCGTCCG CTACAACGGC TTCACAGCCG CCGATATCAA TGGCGGTCCC GCGCCGGGCT ATTCCTCCGA CCAGGCCAAG GCCGCCGTCG AACGCGTCGC GGCCAAGACC TTGCCGGCCG GGTTCAAGTT CGAGTGGACC GACCTGACCT ATCAGCAGAT CCTGGCGGGC AATTCGGCGC TGTGGGTGTT CCCGGTCAGC CTGCTGCTGG TGTTCATGGT CCTGGCCGCT CAGTACGAGA GCCTGACCCT GCCGCTGGCC GTGATCCTGA TCGTACCGAT CAGCGTCTTT GCGGCGCTGT TTGGGGTCTG GCTGCTGCGC GGCGACAACA ACATCTGCAC GCAGATCGGC CTGATGGTGC TGGTGGGCCT GTCGGCCAAG AACGCCATCC TGATCGTGGA GTTCGCCCGC GACCTGGAAA TGCAGGGCCG CAGCATCGTT GACGCCGCCG TCGAGGCCAG CCGCATGCGG CTGCGACCGA TCTTGATGAC CTCGTTCGCC TTCATCATGG GTGTCATCCC CATGGTGCTG TCGAGTGGCG CGGGCGCGGA AATGCGCCGG GCCATCGGGG TGGCGGTGTT CTTCGGAATG CTCGGGGTGA CGCTGTTTGG CCTGATGCTG ACGCCGGTGT TTTACGTGCT GCTGCGGCTT CTGGCCGGGG CTCCGCCGAT CATCGACAAG AACCACACCC ACACCCCCAT CATCGAGTTG GGCGAGCACG TCGACGAGCC GCTCGAGGCT CAAGCGTGA
|
Protein sequence | MNISKYFIDR PIFASVLSAV VLLGGIISVF KLPISEYPDV IPPQVLVHAE FPGANPKVIA ETVAAPIEEK INGVQDMLYM QSQANSDGKM TTTVTFKLGT NPDLAQQLVQ NRVTQAVPHL PEDVQRLGVT TVKASSTMTL AVQISGDQNH DLAYLRNYAL INIKDRLARI PGVGDVQLYG AGDYAMRIWL DPQKLAQRNL TATDAVAAIR EQNVQVSAGM IGGTPNVPGV PLQLDVNVKG RLQSVEEFGE IVVKTGPGGG VIYLRDVARI ELGAAEYGQR TALNNGRSMA IWIFQLPGAN ALQIADAVRK TMAEEIGPEM PAGVSYRIVY DPTRFVKASI EAVIHTLLEA VALVVLVVIM FLQTWRASVI PLLAVPVAIV GTFAFLLGFG YSINALSLFG LVLAIGIVVD DAIVVVENVE RNLEAGLSPK AATYKAMQEV SGPIIAIALT LIAVFVPLAF MSGLTGQFYK QFAVTIAVST VISAFNSLTL SPALAALLLR APHQPKDWLT RVIDRLFGPA FNVFNTVFKR GSHAYGSGVT SALGRKSIML VLYAVLVGGA VLMGKLVPGG FVPAQDKGYL IAVAQLPDGA SLDRTDAVLR QMSDLSKGAP GVQDAVQHPG LSINGFTTSS SSGVVFLGLT PFEERYGHGK PLAADQIATA MTERFGAIKG AKIGVFNPPP VLGLGTLGGF KFQIEDRGAQ GYAALNDATN AFIKAAAQEP ALGPMFSSYQ VNVPQLNVDV NRVKAKQLGV SVTDIFTTMQ IYLGSLYVND FNRFGRVYQV RAQADAPFRA YADHIGLLKT RNAAGEMVPL GSFLTVTPGY GPEMVVRYNG FTAADINGGP APGYSSDQAK AAVERVAAKT LPAGFKFEWT DLTYQQILAG NSALWVFPVS LLLVFMVLAA QYESLTLPLA VILIVPISVF AALFGVWLLR GDNNICTQIG LMVLVGLSAK NAILIVEFAR DLEMQGRSIV DAAVEASRMR LRPILMTSFA FIMGVIPMVL SSGAGAEMRR AIGVAVFFGM LGVTLFGLML TPVFYVLLRL LAGAPPIIDK NHTHTPIIEL GEHVDEPLEA QA
|
| |