| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_5331 |
|---|
| Symbol | |
|---|
| ID | 5897119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010333 |
|---|
| Strand | - |
|---|
| Start bp | 40137 |
|---|
| End bp | 42113 |
|---|
| Gene Length | 1977 bp |
|---|
| Protein Length | 658 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641550623 |
|---|
| Product | TRAG family protein |
|---|
| Protein accession | YP_001672109 |
|---|
| Protein GI | 167621601 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.390385 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCC GCCCCAAGAT CATCCTGCCG CTAGCAGCGG CCAGCGTGTT GATTGCCCTA
TCGATCGCCA CTCAGATCGT CGCTCACGAC TTCCACTACC CGCGTGAGTT CGGCCACGGC
CTGCTGGATG TGGGGCAGGC GAGGATCTAC GCGCCGTGGG CGTTCATTGG CTGGTATGGG
CGCTTCGCGG CGCGCTACCA GCAGGCCTTC GACATGGCGG CGATGATCGC GCTCGCGGCC
GTGTTCGTCC CGTCGATGTT GCTGATCGGG CTGACCAAGA GCACGCGCCG GGCGCCGCGA
GAGTTTGGCA AGGACGCCTG GGCGACCGAG GCCCATGTCC GCAAGGCCAA GCTCGTCCAT
GGTGACGGCC AGATCAGCGG ACGGGTGCTC GGCCGGTTCA ACGGCAAATA CCTCACCTAT
CGCGGTGTGG AGCACGCCAT CATCGTGGGC GCGTCCCGCA GCGGGAAGGG GGCCGGCCAC
GTCGTTCCCA CCCTGATCGC CTGGCCGCAA AGCGCCTTCG TCTACGACCG CAAAGGGGAG
CTTTGGCACA TCACGGCCGA TCACCGGAAG ACCTTCAGCC ACGTCTTCTA TTTCGCGCCG
ACCGACCCCA ACACCGTGCG ATGGAATCCG CTGTTCGAGG TGCGGAAGGG GCCGATGGAG
ATCGCCGACA TCCAGAACGT CGTCGGCATC CTGGTGGACC CGCTGGGCCG AAAGGCGGGC
GACCTCAATT TCTGGGACCA GAGCGCGACG GACTTCTTCA CCGCGATCAT CCTGCACGTC
CTCTACAGCG AGGAGGACAC CAAGAAGAAC CTCGCCCAGG TCCGCCGCCT GCTGATCAAT
ATCGATCCGA CCCTTCATGC GATGAAGCAC ACCAAACATC GCCACAGACC GGACCTTCAT
GCGCCGGGCG GGCTGGCGCG GGGCGCCGAC GGCAAGCCCA TCGCCGAGGT CCACCCGGAG
ATCCTGCTGG GCGCCACGGC GCTGGACAGC ATGGACGAGC GGGTGAAGTC CAATGTGCTG
GCCACCTGTC GGGCGTCGCT ATCGCTGTGG GCCGACCCCT ACGTGGAATA CGCCACCAGC
TGGTCGGACT TCTCGATCGG CGACCTGGTG TGCTCGGAGA GCCCGGTCAC CTTTTACATC
ATCACCCCCC AGGCCCATGC CGACCGCCTC GCCTTTCTGG TGCGGGTGTT CACGCGCCAA
ACGATCAACA GCCTGATGGA ACGCGAGCAT TTCGACAGCC GGGGGCGGCG CAAGGCGCAT
CGACTGCTGC TGCTGCTCGA CGAGTTTCCC AAACTTGGCA GCCTGCCCTT CCTGGAAAAC
GCCATGGGCG AAATGGCCGG CTACGGCATC ACCGCCCACC TGATCTGCCA GAGCTTCAAC
GACGTGTTCT CCAAGTACGG GGACAAGACG CCGATCTTCG ACAACATGCA CATCACCGCC
ACCTTCGCGA CCTCGGAGCC TACGAGCATC GACAAGGTGA TCCGGCGCGC CGGCAAGGCG
CTGGAGATGC GCGAGAGCTA CAGCGATCCG CGCAGCATCT TCGGCAGCTC GCACCGCTCG
ACCTCCCAGA GTGAGCACGA GCGCTACATC CTGACCGAGG ACCGGGTCCG CGAGCTGGAC
GACGACCAGC AGTTCCTGTT CGTGAACAAC ACCAAGCCGA TCCGGGCGGA GAAGATCCGC
TACTACGACG AGCCGTTCTT CAAGGCGCGG ACGGGGGACT ATTTCCACGG CGTGCCCGCC
AAGTACGAGC AGCGGCCGGG TACGGCTGAC CTGCCAGGGC CCGCTCAGAT CGACTGGCTT
GGGGTTCGCG CGGCAGAGCC GGCCCCGGCC GGCCTGAAGG GTGTCGTGCC GCCGCCTGCG
CCCGAAGAGA CGGATGATGG ACCTCAGCCC GCCGGCGACA GCGGGCAGGG CCTCCACGCC
CCGGTCTCGA GCCTGCGATG GACTGGCGAC GACGATGACG ACGGCAGCCT TGGCTGA
|
|---|
| Protein sequence | MSARPKIILP LAAASVLIAL SIATQIVAHD FHYPREFGHG LLDVGQARIY APWAFIGWYG
RFAARYQQAF DMAAMIALAA VFVPSMLLIG LTKSTRRAPR EFGKDAWATE AHVRKAKLVH
GDGQISGRVL GRFNGKYLTY RGVEHAIIVG ASRSGKGAGH VVPTLIAWPQ SAFVYDRKGE
LWHITADHRK TFSHVFYFAP TDPNTVRWNP LFEVRKGPME IADIQNVVGI LVDPLGRKAG
DLNFWDQSAT DFFTAIILHV LYSEEDTKKN LAQVRRLLIN IDPTLHAMKH TKHRHRPDLH
APGGLARGAD GKPIAEVHPE ILLGATALDS MDERVKSNVL ATCRASLSLW ADPYVEYATS
WSDFSIGDLV CSESPVTFYI ITPQAHADRL AFLVRVFTRQ TINSLMEREH FDSRGRRKAH
RLLLLLDEFP KLGSLPFLEN AMGEMAGYGI TAHLICQSFN DVFSKYGDKT PIFDNMHITA
TFATSEPTSI DKVIRRAGKA LEMRESYSDP RSIFGSSHRS TSQSEHERYI LTEDRVRELD
DDQQFLFVNN TKPIRAEKIR YYDEPFFKAR TGDYFHGVPA KYEQRPGTAD LPGPAQIDWL
GVRAAEPAPA GLKGVVPPPA PEETDDGPQP AGDSGQGLHA PVSSLRWTGD DDDDGSLG
|
|---|
| |