Gene PputGB1_5416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_5416 
Symbol 
ID5873231 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp6045373 
End bp6046773 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content63% 
IMG OID641550552 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_001671633 
Protein GI167036402 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.813696 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.542415 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCTT ATGACGTGGT GATCATCGGC GGTGGCCCTG GCGGCTACAA CGCCGCCATC 
CGCGCTGGCC AGCTGGGCCT TAGCGTCGCC TGCGTGGAAG GCCGCTCGAC CTTGGGCGGC
ACCTGCCTGA ACGTTGGTTG CATGCCTTCC AAGGCACTGC TGCATGCTTC CGAGCTTTAC
GAAGCCGCCA GCGGTGACGA ATTCGCCCAC CTCGGTATCG AAGTCAAGCC CACCCTCAAC
CTCGCCCAGA TGATGAAACA AAAGGATGAG AGCGTGACCG GCCTGACAAA GGGCATCGAG
TACCTGTTCC GCAAGAACAA AGTCGACTGG ATCAAAGGCT GGGGGCGCCT GGATGGCGTG
GGCAAGGTCG TGGTCAAGGC CGAAGACGGC AGCGAAACTG CGCTGCAGGC CAAGGACATC
GTCATCGCCA CCGGCTCCGA GCCAACCCCC CTGCCAGGCG TGACTATCGA CAACCAGCGC
ATCATCGACT CGACCGGTGC GCTGTCGCTG CCGCAAGTGC CCAAGCACCT GGTCGTCATC
GGTGCCGGCG TAATCGGCCT TGAGCTGGGT TCGGTCTGGC GCCGGCTGGG TAGCCAGGTC
ACCGTCATCG AATACCTCGA CCGCATCTGC CCAGGCACCG ACACGGAAAC CGCCAAGACC
CTGCAGAAGG CACTGGCCAA GCAAGGCATG GTGTTCAAGC TGGGCAGTAA AGTGACCCAG
GCTACTGCAA GTGCCGATGG CGTGAGCCTG ACGCTGGAGC CTGCCGCTGG CGGCACCGCA
GAATCGCTGC AGGCCGATTA CGTGCTGGTG GCTATCGGCC GCCGCCCTTA TACCAAAGGG
CTGAACCTTG AAAGCGTGGG CCTGGAAACC GACAAGCGTG GCATGCTCGG TAACGAGCAC
CACCGCACTT CAGTGCCAGG TGTGTGGGTG ATTGGCGACG TCACGTCCGG CCCGATGCTG
GCGCACAAGG CCGAAGACGA AGCGGTAGCC TGCATCGAGC GCATCGCCGG CAAGCCCCAC
GAGGTCAACT ACAACCTCAT CCCTGGCGTA ATCTACACCC GCCCGGAGCT GGCCACCGTG
GGCAAGACCG AGGAGCAGCT CAAAGCAGAA GGACGCGCCT ACAAGGTCGG CAAGTTCCCC
TTCACCGCCA ACAGCCGGGC CAAGATCAAC CACGAGACCG AAGGCTTCGC CAAGGTCATC
GCCGATGCCC AAACCGATGA AGTACTGGGC GTACACCTGG TAGGGCCAAG CGTCAGTGAA
ATGATTGGTG AGTTCTGCGT GGCCATGGAG TTCTCGGCCT CGGCAGAAGA CATCGCCCTC
ACCTGCCACC CGCACCCGAC GCGCTCCGAG GCCCTGCGCC AGGCAGCGAT GAATGTGGAC
GGCATGGCGA TGCAGATCTG A
 
Protein sequence
MKSYDVVIIG GGPGGYNAAI RAGQLGLSVA CVEGRSTLGG TCLNVGCMPS KALLHASELY 
EAASGDEFAH LGIEVKPTLN LAQMMKQKDE SVTGLTKGIE YLFRKNKVDW IKGWGRLDGV
GKVVVKAEDG SETALQAKDI VIATGSEPTP LPGVTIDNQR IIDSTGALSL PQVPKHLVVI
GAGVIGLELG SVWRRLGSQV TVIEYLDRIC PGTDTETAKT LQKALAKQGM VFKLGSKVTQ
ATASADGVSL TLEPAAGGTA ESLQADYVLV AIGRRPYTKG LNLESVGLET DKRGMLGNEH
HRTSVPGVWV IGDVTSGPML AHKAEDEAVA CIERIAGKPH EVNYNLIPGV IYTRPELATV
GKTEEQLKAE GRAYKVGKFP FTANSRAKIN HETEGFAKVI ADAQTDEVLG VHLVGPSVSE
MIGEFCVAME FSASAEDIAL TCHPHPTRSE ALRQAAMNVD GMAMQI