| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5404 |
|---|
| Symbol | |
|---|
| ID | 5873219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 6033595 |
|---|
| End bp | 6035355 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641550540 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_001671621 |
|---|
| Protein GI | 167036390 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0475] Kef-type K+ transport systems, membrane components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.115045 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGCCA TCAGCTTCAT CCAGGACCTG GCGGTCATCA TGCTGGTCGC TGGCGTGGTC
ACCATTCTCT TCCATCGCCT CAAGCAGCCG GTGGTGCTTG GGTACATTGT CGCGGGCTTC
ATCATTGGCC CGCACACCCC GCCGTTTGGC CTTATCCATG ATGAAGACAC CATCAAGACC
CTCGCTGAAC TGGGGGTGAT CTTCCTGATG TTCTGCCTGG GGCTCGAGTT CAGCCTGCGC
AAGCTGTTCA AGGTGGGTGC CACAGCGTTC ATCGCAGCGT TCCTGGAAAT CGTGCTGATG
ATCTGGATCG GCTTCGAGAT CGGTCGCTGG TTCGGCTGGA ATACCATGGA CTCGCTGTTC
CTTGGCGCCA TCCTGGCCAT ATCCTCGACC ACCATCATCG TCAAGGCGCT CAACGACCTG
AAGATGAAGA ACGAGCGCTT TGCCCAGCTG ATCTTCGGCG TGCTGATTGT CGAGGACATC
CTTGGCATCG GCATCATTGC CCTGCTGTCG GGTATCGCGG TCAGTGGCAC GGTCAGCTCG
GGTGAGGTGT TCTCCACCGT CGGCAAGCTG TCACTGTTCA TGATCGTCGC CCTGGTCATC
GGCATCTTGT TGGTGCCGCG TCTGCTGGCC TATGTGGCCA AGTTCGAAAG CAACGAGATG
TTGCTGATCA CCGTGCTGGG CCTGTGTTTC GGCTTCTGCC TGCTGGTGGT GAAGCTGGAG
TACAGCATGG TGCTTGGCGC CTTCCTGATT GGTGCGATCA TGGCTGAATC GCGCCAGTTG
CTGAAAATAG AAAGCCTGAT CGAACCGGTA CGCGACCTCT TCAGCGCCAT ATTCTTCGTC
GCCATCGGCC TGATGATCGA CCCCCAGGTG CTCATAGACT ACGCCTGGCC GATCGTGGTC
ATCACCTTGG CGGTGGTGCT GGGCAAGATG CTGTCTTGTG GCATGGGGGC GTTCATCGCC
GGCAATGATG GGCGCACGTC GCTGCGCGTG GGCATGGGGC TATCGCAAAT TGGCGAATTC
TCTTTCATCA TCGCCGCGCT GGGCATGACC CTGCAGGTAA CCAGCGATTT CCTTTACCCG
GTGGCTGTCG CGGTATCGGC AATCACCACG TTGCTGACGC CGTACCTGAT CCGCGCGGCC
GACCCGTTGT CGCAAAAGCT GGGCAATATA GTGCCGGGCC GCCTGGCGCG GGTGCTGTCG
TTGTACGGCG AGTGGTTGCG CAACATCCAG CCGCAGGGCG AGAGCGCCAT GCTGGCGGCG
ATGATTCGGC GCATCCTGTT GCAGGTGGGG GTAAACCTGG CGCTGGTAAT CGCCATTTTC
TTCAGTGGTG GCTACTTCGC AGGGCGAATC GGCAACTGGC TCAGTGAGTG GGTGAGCGAT
GCGAGCCAGC AGAAGGCTGT GATCTGGGGG GCGGCCTTGT TGCTGTCGCT GCCATTCCTT
ATCGCCGCCT ACCGCAAGCT CAAGGCACTT TCGATGTTGC TGGCAGAGAT GGGCGTGAAG
CCTGAAATGG CAGGGCGGCA TACCCAGCGT GTGCGCCGTG TGATTGCTGA AGTTATCCCG
CTGTTGTCGC TGCTGGTGAT CTTCCTGCTG CTGTCGGCAT TGTCGGCGAG CATTCTGCCG
ACCAGCGAGT TGTTGCTGGT GATTGCTGTA GTCGCTGCCG TGGTGGTGGC GTTGTTGTGG
CGCTGGTTCA TCCGCGTGCA CACGCGCATG CAGATCGCCT TGTTGGAGAC GCTAGAGAAT
AGTCGCGAGA ACTCGCACTA A
|
|---|
| Protein sequence | MHAISFIQDL AVIMLVAGVV TILFHRLKQP VVLGYIVAGF IIGPHTPPFG LIHDEDTIKT
LAELGVIFLM FCLGLEFSLR KLFKVGATAF IAAFLEIVLM IWIGFEIGRW FGWNTMDSLF
LGAILAISST TIIVKALNDL KMKNERFAQL IFGVLIVEDI LGIGIIALLS GIAVSGTVSS
GEVFSTVGKL SLFMIVALVI GILLVPRLLA YVAKFESNEM LLITVLGLCF GFCLLVVKLE
YSMVLGAFLI GAIMAESRQL LKIESLIEPV RDLFSAIFFV AIGLMIDPQV LIDYAWPIVV
ITLAVVLGKM LSCGMGAFIA GNDGRTSLRV GMGLSQIGEF SFIIAALGMT LQVTSDFLYP
VAVAVSAITT LLTPYLIRAA DPLSQKLGNI VPGRLARVLS LYGEWLRNIQ PQGESAMLAA
MIRRILLQVG VNLALVIAIF FSGGYFAGRI GNWLSEWVSD ASQQKAVIWG AALLLSLPFL
IAAYRKLKAL SMLLAEMGVK PEMAGRHTQR VRRVIAEVIP LLSLLVIFLL LSALSASILP
TSELLLVIAV VAAVVVALLW RWFIRVHTRM QIALLETLEN SRENSH
|
|---|
| |