Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5340 |
Symbol | pyrE |
ID | 5873155 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5964368 |
End bp | 5965009 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641550476 |
Product | orotate phosphoribosyltransferase |
Protein accession | YP_001671557 |
Protein GI | 167036326 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0461] Orotate phosphoribosyltransferase |
TIGRFAM ID | [TIGR00336] orotate phosphoribosyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.161962 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.00942663 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAGCCGT ATCAGCGCGA CTTTATCCGT TTTGCCATCG ATCGCGGGGT ACTGCGTTTC GGTGAATTCA CCCTGAAATC GGGGCGTACC AGCCCGTATT TCTTCAATGC CGGCCTGTTC AACACCGGTT CCGCATTGGC GGAGCTGGGG CGTTGCTATG CCGCCGCCAT CGTCGACAGC AAGATCCCGT TCGACGTGCT GTTCGGCCCG GCCTACAAGG GTATCCCTTT GGCGGCGACC ACCGCCGTGG CCCTTGCCGA CCAGCATCAG CTCGACGTGC CTTGGTGCTT CAACCGCAAG GAAGCCAAGG ACCATGGCGA AGGCGGCAGC CTGGTCGGCG CGCCGCTGGC CGGTGACGTG CTGATCATCG ACGACGTGAT CACTGCCGGT ACCGCTATCC GTGAGGTCAT GCAGATCATC AACGCCCAGC AGGCCAAGGC CGCTGGCGTG CTGATCGCGC TGAACCGCGA AGAGCGTGGC AATGGCGAAC TGTCGGCGAT CCAGGAAGTG GAGCGTGACT TCGGTATCCC GGTGGTCAGC ATCGTTTCGC TGACCCAGGT GCTGGAGTTC CTGGCGGACG ATCCGCAGCT CAAGCAGCAT CTGCCGGCTG TAGAGGCGTA CCGGGCGCAG TACGGGATCT GA
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Protein sequence | MQPYQRDFIR FAIDRGVLRF GEFTLKSGRT SPYFFNAGLF NTGSALAELG RCYAAAIVDS KIPFDVLFGP AYKGIPLAAT TAVALADQHQ LDVPWCFNRK EAKDHGEGGS LVGAPLAGDV LIIDDVITAG TAIREVMQII NAQQAKAAGV LIALNREERG NGELSAIQEV ERDFGIPVVS IVSLTQVLEF LADDPQLKQH LPAVEAYRAQ YGI
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