Gene PputGB1_5340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_5340 
SymbolpyrE 
ID5873155 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5964368 
End bp5965009 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content63% 
IMG OID641550476 
Productorotate phosphoribosyltransferase 
Protein accessionYP_001671557 
Protein GI167036326 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0461] Orotate phosphoribosyltransferase 
TIGRFAM ID[TIGR00336] orotate phosphoribosyltransferase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.161962 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.00942663 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAGCCGT ATCAGCGCGA CTTTATCCGT TTTGCCATCG ATCGCGGGGT ACTGCGTTTC 
GGTGAATTCA CCCTGAAATC GGGGCGTACC AGCCCGTATT TCTTCAATGC CGGCCTGTTC
AACACCGGTT CCGCATTGGC GGAGCTGGGG CGTTGCTATG CCGCCGCCAT CGTCGACAGC
AAGATCCCGT TCGACGTGCT GTTCGGCCCG GCCTACAAGG GTATCCCTTT GGCGGCGACC
ACCGCCGTGG CCCTTGCCGA CCAGCATCAG CTCGACGTGC CTTGGTGCTT CAACCGCAAG
GAAGCCAAGG ACCATGGCGA AGGCGGCAGC CTGGTCGGCG CGCCGCTGGC CGGTGACGTG
CTGATCATCG ACGACGTGAT CACTGCCGGT ACCGCTATCC GTGAGGTCAT GCAGATCATC
AACGCCCAGC AGGCCAAGGC CGCTGGCGTG CTGATCGCGC TGAACCGCGA AGAGCGTGGC
AATGGCGAAC TGTCGGCGAT CCAGGAAGTG GAGCGTGACT TCGGTATCCC GGTGGTCAGC
ATCGTTTCGC TGACCCAGGT GCTGGAGTTC CTGGCGGACG ATCCGCAGCT CAAGCAGCAT
CTGCCGGCTG TAGAGGCGTA CCGGGCGCAG TACGGGATCT GA
 
Protein sequence
MQPYQRDFIR FAIDRGVLRF GEFTLKSGRT SPYFFNAGLF NTGSALAELG RCYAAAIVDS 
KIPFDVLFGP AYKGIPLAAT TAVALADQHQ LDVPWCFNRK EAKDHGEGGS LVGAPLAGDV
LIIDDVITAG TAIREVMQII NAQQAKAAGV LIALNREERG NGELSAIQEV ERDFGIPVVS
IVSLTQVLEF LADDPQLKQH LPAVEAYRAQ YGI