Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5334 |
Symbol | |
ID | 5873149 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5957690 |
End bp | 5959297 |
Gene Length | 1608 bp |
Protein Length | 535 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641550470 |
Product | extracellular solute-binding protein |
Protein accession | YP_001671551 |
Protein GI | 167036320 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.00805263 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGTGCTG CCGCCCTTTC CTTATTGTTC AACTCTCTGT TCGCCGCCGG CGCTCTGTTC GCTGCCGGCG CAGCTCAGGC CGCGCCGCTG AGCGTTTGCA GCGAAGCCAG CCCCGAAGGC TTCGACGTGG TGCAGTACAA CTCGCTGACC ACGACCAACG CCACGGCTGA CGTGCTGATG AACCGCCTGG TGGAGTTCGA CGCGGCGCAA GGCAAGGTGG TGCCAAGCCT GGCGGCCAGT TGGACAGTAT CGGCCGACGG CCTGGTGTAT GACTTCACCC TGCGCGACGG CGTGAAGTTC CACAGCACCG CCTACTTCAA GCCAAGCCGC GAGCTGAACG CCGACGATGT GTTGTTCAGC TTCCAGCGCA TGCTCTACCC GGCACACGCG TGGCACAAGA CGGCACCGGG CGGCTACCCG CATGCTCAGT CGCTGCAGTT GGGCAGCCTG ATCAAGGCGA TCGAGGCACC TGCACCGAAC GCCGTGCGCT TCACCCTCAG CCACCCGGAC GCTACCTTCC TGGCCACCCT GAGCATGGGC TTCGCCTCGA TCTACTCCGC CGAGTATGCC GACAAGCTGC TCAAGGCCGG CACGCCCGAG AAGCTCAACA GCCAGCCGAT CGGCACCGGG CCGTTCGTAT TCCAGCGCTT CCAGAAGGAC GCCGTGGTGC GCTACCGCGC CAACCCGGAC TACTTCGCCG GCAAGCCGGC GGTCGACCCG CTGATCTTCG CCATTACCAC CGATGCCAAT GTGCGCCTGC AGAAGCTCAA GCGGGGCGAG TGCCAGGTTG CCTTGTCGCC CAAGCCGCTG GACATTGCCG AAGCAGGCAA GGACAGCAAC CTCAAGGTAG CCACGACGCC GGCGTTCATG ACCGCCTTCG TCGCCATCAA CAGCCAGCAC CCACCGCTGG ACAAGCCAGA AGTGCGCCAG GCCATCAACC TGGCCTTCGA CAAGCAGGCT TACCTCAAAG CCGTGTTCGA AGACTCCGCA GTGGCCGCCA ACGGCCCCTA CCCGCCCAAC ACCTGGAGCT ACGCCAAGGA CCTGCCCGGC TACCCGCTGG ACCTGAAGAA AGCCAAGGCG CTGCTGGCCA AAGCCGGCTT GGCCGAAGGC TTCAGCACCA CCATCTGGAC CCGCCCGTCG GGCAGCCTGC TCAACCCCAA CCCCAGCCTT GGCGCCCAGA TGCTGCAAGC CGACCTGACC AAGATCGGCA TCAAGGCCGA GATTCGCGTG ATCGAATGGG GCGAGCTGAT CCGCCGCGCC AAGGCCGGCG AGCATGACTT GCTGTTCATG GGCTGGGCAG GCGACAACGG TGACCCGGAC AACTTCCTCA GCCCGCAGTT TTCCTGCGCG GCGGTCGAGT CGGGCACCAA CTTTGCCCGC TTCTGCGACA ACCGCCTGGA CCAGCTGATC AGCGCCGGGC GCACCACCAA CGACCAAAGT GTGCGCAGCC GGCTTTACCA GCAGGCGCAG ACGCTGATTC AGCAGCAGGC GCTGTGGGTG CCACTTGCGC ACCCGACGGC GGCGACCTTG CTGCGCCAGG AGGTCGAGGG GTATCAGGTG AGCCCGTTCG GGCGACTGGA TTTCAGCAAG GTGTCGGTGA CCAAGTAA
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Protein sequence | MRAAALSLLF NSLFAAGALF AAGAAQAAPL SVCSEASPEG FDVVQYNSLT TTNATADVLM NRLVEFDAAQ GKVVPSLAAS WTVSADGLVY DFTLRDGVKF HSTAYFKPSR ELNADDVLFS FQRMLYPAHA WHKTAPGGYP HAQSLQLGSL IKAIEAPAPN AVRFTLSHPD ATFLATLSMG FASIYSAEYA DKLLKAGTPE KLNSQPIGTG PFVFQRFQKD AVVRYRANPD YFAGKPAVDP LIFAITTDAN VRLQKLKRGE CQVALSPKPL DIAEAGKDSN LKVATTPAFM TAFVAINSQH PPLDKPEVRQ AINLAFDKQA YLKAVFEDSA VAANGPYPPN TWSYAKDLPG YPLDLKKAKA LLAKAGLAEG FSTTIWTRPS GSLLNPNPSL GAQMLQADLT KIGIKAEIRV IEWGELIRRA KAGEHDLLFM GWAGDNGDPD NFLSPQFSCA AVESGTNFAR FCDNRLDQLI SAGRTTNDQS VRSRLYQQAQ TLIQQQALWV PLAHPTAATL LRQEVEGYQV SPFGRLDFSK VSVTK
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