| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5288 |
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| Symbol | |
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| ID | 5873103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 5907248 |
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| End bp | 5908495 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641550424 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001671505 |
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| Protein GI | 167036274 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCTT TCAACTACCG CGACGGTGAG CTGTTCGCGG AAGGCGTGGC CCTGTCGGCC
ATCGCCGAGC GCTACGGCAC CCCCACCTAC GTGTATTCGC GCGCCCACAT CGAGGCCCAG
TACCGTAGCT ACGCCGATGC CCTGCAAGGC ACTGAACACT TGGTGTGCTT CGCGGTAAAG
GCCAACTCCA ACCTGGGCGT ACTGAATGTA CTGGCGCGCC TGGGCGCAGG TTTCGACATT
GTCTCCGGCG GTGAGCTGGA GCGCGTGCTG GCCGCTGGCG GGCGCGCAGA CCGCGTGGTC
TTCTCCGGCG TCGGTAAAAC CCGTGAAGAC ATGCGCCGCG CCCTGGAAGT TGGCGTGCAC
TGCTTCAACG TCGAATCCAC CGACGAACTG GAGCGCCTGC AAGTAGTGGC CGCTGAAATG
GGCAAGGTTG CCCCGGTGTC GCTGCGCGTC AACCCGGACG TCGATGCCGG TACCCACCCT
TACATCTCCA CAGGCCTCAA AGAAAACAAG TTCGGCATCG CCATCGCCGA CGCCGAGGCC
ATCTACGTGC GTGCCGCACA GCTGCCGAAC CTGGAAGTGG TCGGTGTCGA CTGCCACATT
GGCTCGCAGC TGACCACCGT GGAGCCGTTC CTCGACGCAC TCGACCGCCT GCTGGTACTG
GTCGACCGCC TGGCCGAATG CGGTATCCAC CTGCGCCACC TGGACTTGGG CGGCGGTGTT
GGCGTTCGCT ACCGCGACGA ACAGCCGCCG CTGGTGGCCG ACTACATCAA AGCCATCCGC
GAGCGCGTGG GCGAGCGCGA CCTGGCCCTG GTGTTCGAGC CGGGCCGCTA CATCGTGGCC
AACGCTGGCG TGCTGCTGAC CCGTGTGGAA TACCTCAAGC ACACCGAACA CAAGGACTTC
GCCATCATCG ATGCGGCGAT GAACGACCTG ATTCGGCCGG CCCTGTATCA AGCCTGGATG
GGTGTCAGCG CGGTCAAGCC TCGTGCGGGC GAAGGCCGTG CCTACGACCT GGTCGGCCCT
ATCTGCGAGA CCGGCGACTT CCTTGGCAAG GACCGCGTGC TGAACCTGGC CGAAGGTGAC
TTGCTGGCCG TAGCGTCTGC GGGCGCCTAT GGTTTTGTCA TGAGTTCCAA CTACAACACC
CGTGGCCGTT GCGCTGAAAT CCTGGTCGAC GGCGACCAGG CGTTCGAAGT ACGCCGCCGC
GAGACCATCG CCGAACTGTA CGCTGGCGAA AGCCTGCTGC CGGAGTAA
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| Protein sequence | MNAFNYRDGE LFAEGVALSA IAERYGTPTY VYSRAHIEAQ YRSYADALQG TEHLVCFAVK
ANSNLGVLNV LARLGAGFDI VSGGELERVL AAGGRADRVV FSGVGKTRED MRRALEVGVH
CFNVESTDEL ERLQVVAAEM GKVAPVSLRV NPDVDAGTHP YISTGLKENK FGIAIADAEA
IYVRAAQLPN LEVVGVDCHI GSQLTTVEPF LDALDRLLVL VDRLAECGIH LRHLDLGGGV
GVRYRDEQPP LVADYIKAIR ERVGERDLAL VFEPGRYIVA NAGVLLTRVE YLKHTEHKDF
AIIDAAMNDL IRPALYQAWM GVSAVKPRAG EGRAYDLVGP ICETGDFLGK DRVLNLAEGD
LLAVASAGAY GFVMSSNYNT RGRCAEILVD GDQAFEVRRR ETIAELYAGE SLLPE
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