Gene PputGB1_5227 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_5227 
Symbol 
ID5873041 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5839249 
End bp5840049 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content71% 
IMG OID641550363 
ProductTonB family protein 
Protein accessionYP_001671445 
Protein GI167036214 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0810] Periplasmic protein TonB, links inner and outer membranes 
TIGRFAM ID[TIGR01352] TonB family C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.631844 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTAATG TCCAATCGGC CGTCAGGGCC TACGACCAGC CATGGCGCCC GGCCCCAGGC 
GACCTGGTCG AGCTTGGACG CACGCTTCGC CTGCCGCTTG GCCAGCTGCG CCTGCAACGC
ACGCCTGTGA GCGGGCTCAA GCGCCGCGAC AAGCTGGTGT TGGGCCTGCT GGTGCTGGCC
CTGCATGGCG CCGCCGCGTA CTGGGTCAGC CAGGCGCCCA CGCCCGAACT GCCGGTTGTG
CCGCCACAGG TGCCGCCCAT GACCATCGAG TTCGCGGCAC CCGCACCGCC TGTGGTCGAG
CCTCCGCCGC CTGCGCCCGC GCCTCCCGTG GTCGAGCCAC CGCCGCCGCC ACCGGTCGTC
GACGAACTGG CCGCCAAGCC CAAACCCAAA CCGAAGCCCG TGCCAAAGCC TGTGGTCAAG
CAAGCGCCCA AGCCACAGCC CAAGCCGGTT GAAGCACCAC CACCCGCGCC AGTGGCGGCC
CCGGCACCGC CTGCGCCCGC ACCACCCGCG CCGGCCCCGA TAACCCCGGC ATCGGCCAAC
GCCGCGTACC TGAAGAACCC GGCGCCGGAG TACCCGCAGA TGGCTCAGCG CCGTGGCTGG
GAGGGCACCG TGCTGTTGCG TGTCGAAGTG CTGCCCAGCG GCAAGCCTGG GCAGATCCAG
GTTCAGAAGA GCAGCGGCCG TGACGCCCTC GACGCCGCCG CGCTGGCCGC GGTGAAGCGC
TGGAGCTTCG TGCCCGCCAA GCAGGGTGAT GTGGCCCAGA CCGGCTGGGT CAGCGTGCCG
ATCGATTTCA AGCTTCGCTA A
 
Protein sequence
MGNVQSAVRA YDQPWRPAPG DLVELGRTLR LPLGQLRLQR TPVSGLKRRD KLVLGLLVLA 
LHGAAAYWVS QAPTPELPVV PPQVPPMTIE FAAPAPPVVE PPPPAPAPPV VEPPPPPPVV
DELAAKPKPK PKPVPKPVVK QAPKPQPKPV EAPPPAPVAA PAPPAPAPPA PAPITPASAN
AAYLKNPAPE YPQMAQRRGW EGTVLLRVEV LPSGKPGQIQ VQKSSGRDAL DAAALAAVKR
WSFVPAKQGD VAQTGWVSVP IDFKLR