| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5134 |
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| Symbol | |
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| ID | 5872949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 5746035 |
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| End bp | 5748488 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641550272 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_001671354 |
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| Protein GI | 167036123 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATACGTC TGCTGAAGTT CTTCTGGTGG TCATCCGTCG CAGTCATCTG CGCGCTCGTA
CTCGGTGTGA GCGGTGCGTT TCTGTATCTT AGCCCCAGCC TGCCCTCGGT CGAGTCACTC
AGAAGCATCC AGTTGCAGAT CCCACTCAGG GTGTACAGCA GCGACGGCAA GCTGATTGCC
GAATTCGGCG AAATGCGCCG CTCGCCGATC CGCTTCGCGG AAATTCCCCC ACAATTCATT
CAGGCGCTGC TGTCAGCTGA GGACGACAAC TTCCTCAACC ACTATGGTGT AGACCCCAGC
AGCCTGATGC GTGCCGCGAC CCAGCTGGTG AAAACCGGGC ACATCCAGAC CGGCGGCAGC
ACCATCACCA TGCAGGTGGC GAAGAACTTC TTCCTCACCA GCGAGCGCAG CTTCTCGCGC
AAGACCAACG AAATCCTGCT GGCCCTGCAG ATCGAGCGTG AGCTGACCAA GGACGAAATC
CTTGAGCTGT ACGTGAACAA GATCTACCTG GGCAACCGCG CCTACGGTAT CGACGCCGCT
GCGCAGGTGT ACTACGGCAA GTCGATCCGT GACGTGAGCC TGGCGCAGAT GGCGATGATC
GCCGGCCTGC CCAAAGCACC GTCGCGCTTC AACCCACTGG CCAACCCGGC ACGTGCCAAG
GAACGCCGCG ACTGGATCCT CGGCCGCATG TACAAGCTGG GCAAGATCGA CGAGGCCAGC
TACCAGGCCG CCTTGGCCGA GCCGCTCAAC GCCAGCTACC ACGTACCGAC GCCTGAAGTG
AATGCCCCGT ACATCGCTGA AATGGCCCGC GCGGAAATGG TCGGCCGTTA CGGCAGCGAT
GCCTATACCG AGGGCTTCCG CGTCACGACC ACCGTGCCCA GCGACATGCA GGAAATGGCC
AACAAGGCCG TCCTCAACGG GCTTTCCGAT TACGACGAAC GCCACGGTTA CCGCGGCCCT
GAAGCACGCT TCCCGGGCCG TACCCAGGCA GCTTGGCTGC AGGAACTGGG CAAGCAACGC
ACCCTCGGCG GCCTGGAGCC AGCCATTGTC ACTCAAGTTG AAAAAACCGG CCTCAAAGTG
CTGACCCGTG ACGGCCAGGA AGCGCAGGTT GCTTGGGACA CCATGAAATG GGCGCGCCCG
TTCATCAACA GCAACGCCCA GGGGCGCACA CCGCAGTCGC CTTCCGACGT GGCGCAGGTC
GGTGACCTGG TGCGCTTGCA ACGTCTGGAA GATGGCAAGT TCAAGTTCAG CCAGGTGCCC
GGTGCGCAGA GTGCACTGGT TACCCTCGAC CCCTACAACG GCGCCATCCG CGCCCTGGTC
GGCGGCTTCT CGTTCGAGCA GAGCAACTAC AACCGCGCCA TGCAGGCCAA GCGCCAACCT
GGCTCTAGTT TCAAGCCATT CATCTACAGC GCCGCGCTGG ACAGCGGTTA CACCGCCGCC
ACCCTGGTCA ACGATGCGCC GATCGTGTTC GTTGACGAGT CGGTGGATAA AGTGTGGCGG
CCGAAGAACG ACACCAACAC CTTCCTCGGC CCGATCCGCA TGCGTGAGGC GCTGTACAAA
TCGCGCAACC TGGTGTCGAT CCGCCTGCTG CAGGCCATGG GCGTGGACCG CACCATCGAC
TACATCGCCA AGTTCGGCTT CAACAAGCAG GACCTGCCGC GCAACCTGTC GCTGGCACTG
GGTACCGCCA CCCTGACCCC GATGGAAATC GCCACCGGGT GGAGCACCTT TGCCAACGGT
GGCTACAAGA TCACCCCTTA CCTGATCGAC CGCATCGAAA GCCGCAGCGG CGAGACGCTG
TTTACTTCCA ACCCAGCCCG CGTACCGCAA GGTGCCGAGG ACCAGGCTGG CCTGGCCGCA
CCCGAGCAGC CAATCAGCAC CGCCGCCATG CCAGGCGAAG CACCGCCTGC CTTCAGTCAG
GTGGCAACTG CACCACAAGC GCCGGCGATA GCCGAACAGA TCGTCGACGG GCGTACCACC
TACATCCTCA CCAGCATGCT GCAGGACGTG ATCAAGCGCG GTACCGGTCG CCGGGCACTG
GCCTTGGGCC GTACCGACCT GGCGGGCAAG ACCGGTACCA CCAACGAATC CAAGGACGCC
TGGTTCTCGG GCTACAACGC CGACTACGTG ACGACCGTGT GGGTCGGTTT CGACCAGCCA
GAAACGCTCG GTCGCCGCGA GTACGGCGGT ACGGCGGCGC TGCCGATCTG GATGAGTTTC
ATGGGCGCGG CGCTCAAGGA CAAACCGGCG CATGCGCCAG CAGAACCGGA AGGCATCCTC
AGCCTGCGGG TGGACCCGGT CAGCGGGCGC GCCGCCTCGC CGAGCACACC GAATGCCTAC
TTCGAGCTGT TCAAGGCCGA AGACTCGCCG CCATCGGTGG ACGAGCTGGG CAATGGCGCG
GCACCGGGCA GCCCGCTGCC AGCCGATGAA GCAGCGCCGA TGGATCTGTT CTGA
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| Protein sequence | MIRLLKFFWW SSVAVICALV LGVSGAFLYL SPSLPSVESL RSIQLQIPLR VYSSDGKLIA
EFGEMRRSPI RFAEIPPQFI QALLSAEDDN FLNHYGVDPS SLMRAATQLV KTGHIQTGGS
TITMQVAKNF FLTSERSFSR KTNEILLALQ IERELTKDEI LELYVNKIYL GNRAYGIDAA
AQVYYGKSIR DVSLAQMAMI AGLPKAPSRF NPLANPARAK ERRDWILGRM YKLGKIDEAS
YQAALAEPLN ASYHVPTPEV NAPYIAEMAR AEMVGRYGSD AYTEGFRVTT TVPSDMQEMA
NKAVLNGLSD YDERHGYRGP EARFPGRTQA AWLQELGKQR TLGGLEPAIV TQVEKTGLKV
LTRDGQEAQV AWDTMKWARP FINSNAQGRT PQSPSDVAQV GDLVRLQRLE DGKFKFSQVP
GAQSALVTLD PYNGAIRALV GGFSFEQSNY NRAMQAKRQP GSSFKPFIYS AALDSGYTAA
TLVNDAPIVF VDESVDKVWR PKNDTNTFLG PIRMREALYK SRNLVSIRLL QAMGVDRTID
YIAKFGFNKQ DLPRNLSLAL GTATLTPMEI ATGWSTFANG GYKITPYLID RIESRSGETL
FTSNPARVPQ GAEDQAGLAA PEQPISTAAM PGEAPPAFSQ VATAPQAPAI AEQIVDGRTT
YILTSMLQDV IKRGTGRRAL ALGRTDLAGK TGTTNESKDA WFSGYNADYV TTVWVGFDQP
ETLGRREYGG TAALPIWMSF MGAALKDKPA HAPAEPEGIL SLRVDPVSGR AASPSTPNAY
FELFKAEDSP PSVDELGNGA APGSPLPADE AAPMDLF
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