Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5128 |
Symbol | aroB |
ID | 5872943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5740527 |
End bp | 5741657 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641550266 |
Product | 3-dehydroquinate synthase |
Protein accession | YP_001671348 |
Protein GI | 167036117 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0337] 3-dehydroquinate synthetase |
TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCCGC GCCCAAGTAC ATTGTGGGGA TACATGCAGA CACTAAAGGT CGACCTGGGC GAGCGTAGCT ACCCGATCTA CATTGGCGAA GGCCTGCTGG ACCAGCCCGA ACTGCTGGCG CCGCACATTG CCGGCCGGCA GGTTGCCATC GTTTCCAACG AGACCGTCGC CCCCCTGTAT CTCGAACGCC TGAGCAAGAC CCTGGGTGCC TACTCGGTAC TGCCGGTGGT GTTGCCCGAT GGCGAAGCCC ACAAGAATTG GGAAACCCTG CAACTGATTT TCGATGGCTT GCTGACAGCC CGCCATGATC GTCGCACCAC CGTGGTCGCC CTGGGCGGCG GCGTGATCGG CGACATGGCC GGCTTCGCTG CCGCTTGCTA CCAGCGCGGT GTCGACTTCA TCCAGGTGCC GACCACCCTG TTGTCCCAGG TCGACTCTTC GGTGGGCGGC AAGACCGGCA TCAATCACCC GCTGGGCAAG AACATGGTCG GTGCCTTCTA TCAGCCCAAT GCGGTACTGA TCGATACCAC CAGCCTCAAG ACCCTGCCCG CGCGCGAACT GTCCGCAGGC CTGGCCGAAG TGATCAAGTA CGGCCTGATT TGCGACAAAC CGTTCCTCGC CTGGCTCGAA GACAATATGC AGGCCCTGCG CGCCCTTGAC TCGGCAGCCC TGACCGAGGC CATCCGCCGC TCCTGCGCGG CCAAGGCCGC AGTAGTGGGG GCCGACGAGC GCGAGTCGGG CGTACGGGCC ACGCTGAACC TGGGGCATAC CTTCGGGCAT GCCATCGAAA CCCACATGGG CTATGGCGTG TGGTTGCACG GCGAGGCCGT GGCGGCGGGC ACGGTGATGG CCCTGGAAAT GTCCATGCGT CTTGGCTGGA TCGACCAGGC CGAGCGCGAT CGCGGTATCC GCCTGTTGCA GGATGCAGGT TTGCCGGTGG TGCCACCACA GGAAATGACC CCGGCGCATT TCATGGAGCA CATGGCGGTC GACAAGAAGG TGCTCGACGG TCGTCTGCGT CTGGTGCTGC TGCGCCAGAT GGGCGAGGCC GTAGTGACCG ACGACTATTC GAAAGAGATT CTACAGGCCA CGCTGTCGGC GGATTACCGC GCGATCGTGG CCCAGCTTTG A
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Protein sequence | MAPRPSTLWG YMQTLKVDLG ERSYPIYIGE GLLDQPELLA PHIAGRQVAI VSNETVAPLY LERLSKTLGA YSVLPVVLPD GEAHKNWETL QLIFDGLLTA RHDRRTTVVA LGGGVIGDMA GFAAACYQRG VDFIQVPTTL LSQVDSSVGG KTGINHPLGK NMVGAFYQPN AVLIDTTSLK TLPARELSAG LAEVIKYGLI CDKPFLAWLE DNMQALRALD SAALTEAIRR SCAAKAAVVG ADERESGVRA TLNLGHTFGH AIETHMGYGV WLHGEAVAAG TVMALEMSMR LGWIDQAERD RGIRLLQDAG LPVVPPQEMT PAHFMEHMAV DKKVLDGRLR LVLLRQMGEA VVTDDYSKEI LQATLSADYR AIVAQL
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